PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015490.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 135aa    MW: 15013 Da    PI: 11.8671
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015490.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36e-164072133
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCda 33
                krienk+ rqvtf kRrn + KKA+ LSvLCda
  Do015490.1 40 KRIENKIYRQVTFGKRRNSLRKKAYDLSVLCDA 72
                79******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.8063272IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-133285IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-163373IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-143454IPR002100Transcription factor, MADS-box
PfamPF003191.6E-134172IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-145469IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
LITSASRVPR RLPPCRKWNP NHSSSGGSCR RHGEGRVELK RIENKIYRQV TFGKRRNSLR  60
KKAYDLSVLC DATSRSRSSS SSSSSISNGL PPQSKRVLHR AEECIRLHAR LHSAHSCVPA  120
SSGTDMIFGS RSSQI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333987e-42BT033398.1 Zea mays full-length cDNA clone ZM_BFb0100K01 mRNA, complete cds.
GenBankBT0879427e-42BT087942.1 Zea mays full-length cDNA clone ZM_BFb0323H23 mRNA, complete cds.
GenBankKJ7283377e-42KJ728337.1 Zea mays clone pUT6618 MADS transcription factor (MADS49) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VA593e-91A0A1E5VA59_9POAL; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.38e-15MIKC_MADS family protein