PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015568.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 216aa    MW: 23655.6 Da    PI: 7.722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015568.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00089185207123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C +C+ +Fs++  +  H++ H
  Do015568.1 185 YQCRICPARFSSSQAYGGHMSHH 207
                 9******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64185212IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNPPNDINST NNKPIVSPLH EALLGTTAIP IMDPSSQSQP TDQPIFHAPQ EPSKMTMHRN  60
YTLLSSIPFQ ARFAANSSNQ QQTLSSEHNF LTTPVSDYLS SSDRMAIMSM DAPSITSLLQ  120
GDPVAVLHAH LNTIRGSDLG PIFENATQVP REQQMPVRET VCASDNIVHS VSSSTMKNER  180
GGNIYQCRIC PARFSSSQAY GGHMSHHSKD KKKGKI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015568.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VK901e-159A0A1E5VK90_9POAL; Uncharacterized protein
STRINGPavir.Eb02185.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11492612