PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015647.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 121aa    MW: 13871.2 Da    PI: 10.5148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015647.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.93.8e-183480455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  Do015647.1 34 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 80
                59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-202787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5273079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.49E-173384No hitNo description
SuperFamilySSF474596.8E-2233106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-153480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-183685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
LVRKLVKSSP HMEDGGVPRR STPPTTRRSR SAEFHNFSER RRRDRINEKL KALQELLPNC  60
TKTDKVSMLD EAIDYLKSLQ LQLQMLVMGK GMAPVVPPEL QQYMHYITAD PAQMPPMRPS  120
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015647.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9542881e-105EU954288.1 Zea mays clone 1461253 protein SPATULA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447108.11e-74transcription factor PIF1 isoform X1
RefseqXP_021319609.11e-74transcription factor PIF1 isoform X2
RefseqXP_021319610.11e-74transcription factor PIF1 isoform X3
SwissprotQ0JNI96e-32PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A1E5VEZ87e-84A0A1E5VEZ8_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Gb00491.1.p5e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-28phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]