PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015726.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 419aa    MW: 45603.3 Da    PI: 9.122
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015726.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.65.5e-0774134355
         AP2   3 ykGV......rwdkkrgrWvAeIrdpse.ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV       +++ +g+++A+++d  + +   k+k+ + g f+++e Aa a++ a++k++g
  Do015726.1  74 YRGVtrcvigQRHRGSGKFEAHLWDR-NaRSpaKNKKGRQGGFDSEEAAAHAYDLAALKYWG 134
                 666644445545777888*****995.336698887778899******************98 PP
2AP2521.8e-16177228155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 sgy+GV  ++ +grW+A+I       g +k+ +lg fgt eeAa+a++ a+++l+g
  Do015726.1 177 SGYRGVAKHHHNGRWEARIGYaS---G-KKYLYLGIFGTQEEAARAYDLAALELRG 228
                 89****************76633...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
PROSITE profilePS5103217.12273142IPR001471AP2/ERF domain
SMARTSM003801.5E-1373148IPR001471AP2/ERF domain
PRINTSPR003678.6E-57485IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1281143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.2E-1283143IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17177237IPR016177DNA-binding domain
CDDcd000182.90E-20177238No hitNo description
PfamPF008471.9E-12177228IPR001471AP2/ERF domain
SMARTSM003809.9E-24178242IPR001471AP2/ERF domain
PROSITE profilePS5103217.556178236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-17179237IPR001471AP2/ERF domain
PRINTSPR003678.6E-5218238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTKPHCAVTP LSPSSRAASS LSCLSSSAST SGSCYAPASW PPKCTSKKKR SNRRRAKNGA  60
GGAVAVPRRN SSIYRGVTRC VIGQRHRGSG KFEAHLWDRN ARSPAKNKKG RQGGFDSEEA  120
AAHAYDLAAL KYWGSDCKLN FPLESYKHEQ ERMQRMTREA YLATLRRRSS CFSRGASGYR  180
GVAKHHHNGR WEARIGYASG KKYLYLGIFG TQEEAARAYD LAALELRGDA AITNFDSSSY  240
TDYLQQHEAP VPKAQPRSDL KPKTEPVDEA PAPLLLPPKA ASWNWKTPLL TPKPEPEDEL  300
AYPLAPLPPG PVLRDVDDAD HAISEILPAL CMDPADFEAR YPARRARALG WPFDDQLRAL  360
PLPDAGCFED DIETLFEAPG SAGPGQGEAQ LPAAAAAVVP DAVSYAAATI SSLASGRWW
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015726.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970326.20.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1E5VJZ40.0A0A1E5VJZ4_9POAL; Ethylene-responsive transcription factor WRI1
STRINGSi004222m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-61AP2 family protein