PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do015775.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

YABBY

Protein Properties

Length: 229aa MW: 23587.8 Da PI: 8.7857

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do015775.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	84.1	4e-26	47	96	5	54
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54 +seq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sllsvn++ Do015775.1 47 PTSEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLSVNMRGLL 96 689****************************************9998654 PP
2	YABBY	38.2	5.2e-12	199	229	105	134
YABBY 105 edeevprvpp.virPPekrqrvPsaynrfik 134 ++e +pr+ p v+rPPekrqrvPsaynrfik Do015775.1 199 SKEPSPRTNPvVNRPPEKRQRVPSAYNRFIK 229 566778888879******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.0E-34	48	229	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSSSSSSSSA ASAAAVFPPS PQAPPPPLLV ENLPPLHQLT PVAAAAPTSE QLCYVHCHFC 60 DTVLVVSVPT SSLFKTVTVR CGHCSSLLSV NMRGLLFPGT PTITAAAAAT DAVTASTTTT 120 ITTAPPPAAT SVNNGQFHFP HSLNLAPNPP HQSLLDEISS ANPNLQLLEQ HGLGGLIPGG 180 RNAAAPPPTP QPAAAGKGSK EPSPRTNPVV NRPPEKRQRV PSAYNRFIK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do015775.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU971153	1e-160	EU971153.1 Zea mays clone 358521 axial regulator YABBY1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796914.1	1e-108	protein YABBY 3-like
Swissprot	Q8L556	9e-49	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A1E5VBS8	1e-159	A0A1E5VBS8_9POAL; Uncharacterized protein
STRING	Pavir.Ia02088.1.p	1e-105	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22855	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	4e-14	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]