PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015875.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 71aa    MW: 7582.99 Da    PI: 8.5134
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015875.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.91.9e-102361140
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy 40
                lp GfrF+Ptdeel+ +yL++k+ + +l++  +i++++++
  Do015875.1 23 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDANLT 61
                799**********************99999.889988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-141463IPR003441NAC domain
PROSITE profilePS5100514.4652371IPR003441NAC domain
PfamPF023651.1E-62446IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MEGQPGGAWR MLQGLTGAPV AGLPIGFRFR PTDEELLLHY LRRKALACPL PAGIIPDANL  60
TCLPSLKTPC A
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699702e-50EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817662.17e-30NAC domain-containing protein 83-like isoform X1
RefseqXP_025817663.17e-30NAC domain-containing protein 10-like isoform X2
TrEMBLA0A1E5VG061e-43A0A1E5VG06_9POAL; Uncharacterized protein
STRINGPavir.Eb03721.1.p9e-29(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-13NAC domain containing protein 47