PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015877.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 101aa    MW: 10706.8 Da    PI: 8.2176
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015877.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-052749123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H++ H
  Do015877.1 27 YECSFCKRGFTNAQALGGHMNIH 49
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.31E-72653No hitNo description
PfamPF139126.9E-62651IPR007087Zinc finger, C2H2
SMARTSM003550.0092749IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3232754IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-42751IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MEGGFNKAGS PEASGEGTRR APAGAYYECS FCKRGFTNAQ ALGGHMNIHR KDRGGKSGTA  60
PPQQDDSGGS RIYGGDVHLG LSLGRKEDVD LELRLGSYPY N
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959168.14e-65probable transcriptional regulator RABBIT EARS
TrEMBLA0A1E5VXJ51e-67A0A1E5VXJ5_9POAL; Uncharacterized protein
STRINGSi032478m1e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-17C2H2 family protein