PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016015.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 145aa    MW: 15093.8 Da    PI: 3.7472
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016015.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033113129117
                 EEETTTTEEESSHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                 ++Cp C k+F+r  n++
  Do016015.1 113 FSCPVCYKTFNRYNNMQ 129
                 89*********988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-4113128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MPSCSDDDDP MDVEAGGAST NDAAVALRIG LPAAPVMNGC GGTEADLLSG LSGKAYGGME  60
PEEDEDEYKV DTGTGDGDEV VPLGFASTPT GRLNKGQYWI STPAQILIGP TQFSCPVCYK  120
TFNRYNNMQV SATPMLTLSP TSSCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562445e-46AC256244.1 Hordeum vulgare clone HV_Mba442-A05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973849.16e-67zinc finger protein WIP2
TrEMBLA0A1E5WF871e-102A0A1E5WF87_9POAL; Uncharacterized protein
STRINGSi013819m2e-66(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.12e-23C2H2 family protein