PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do016044.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LSD

Protein Properties

Length: 76aa MW: 7848.09 Da PI: 8.3305

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do016044.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	52.9	6.1e-17	9	33	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ Do016044.1 9 CGQCQTVLMYPYGAPSVKCAICNFI 33 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.1E-12	6	35	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.5E-15	9	33	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
VSSIAHVNCG QCQTVLMYPY GAPSVKCAIC NFITNVGGPP SQPQNVTVVV ENPMTVDDKG 60 KLVSNVVVGV TTGGKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do016044.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN983231	7e-50	JN983231.1 Miscanthus sinensis clone MSIL000019 putative zinc finger LOL2 mRNA, complete cds.
GenBank	KF314699	7e-50	KF314699.1 Setaria italica clone Si18S 18S ribosomal RNA gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805781.1	6e-39	protein LOL2-like isoform X2
Swissprot	Q2QMB3	4e-38	LOL2_ORYSJ; Protein LOL2
TrEMBL	A0A1E5VG10	1e-46	A0A1E5VG10_9POAL; Uncharacterized protein (Fragment)
STRING	OPUNC12G16710.1	6e-40	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.6	1e-15	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wu J, et al. OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. Plant J., 2014. 80(6): p. 1118-30 [PMID:25353370]