PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do016280.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

FAR1

Protein Properties

Length: 542aa MW: 61440.9 Da PI: 7.235

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do016280.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.7	1.5e-26	86	175	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s+ksk +++i++ +fvCs+eg+++e++ +k+r++ a+ r gC+a+l+v ++ d+kw+vtkl++eHnHe+ Do016280.1 86 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSREGFSKEKRVVaaGKKTRKRPASIREGCNAMLEVLRRGDSKWVVTKLVKEHNHEV 175 9*************************************998876657788888999****************************95 PP
2	FAR1	58.3	2.5e-18	209	299	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA+++GF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++ ++k+ + +r gC+a +++ ++ +++w v+kl leH+Hel+p Do016280.1 209 FYYSYASRAGFEPRVRQSRKS-QDESLKMLKLVCSRHRYHSGRENNgeDTKRVHALDPSRDGCDALFEIIRKGKDVWTVSKLILEHTHELSP 299 9*****************9.6777**********9999995455555677789*****************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-24	86	175	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-15	209	299	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MMEPQVVDLE DDSINFWASL GVSPHVDQMP LHNVHIVDHQ AQPPPAAAAA AQPQSVCRDL 60 FPVESDACLE PRLGMEFESG EAAKTFYIAY AGRVGFSVRI ARSRKSKCSE SIIMLRFVCS 120 REGFSKEKRV VAAGKKTRKR PASIREGCNA MLEVLRRGDS KWVVTKLVKE HNHEVGLPSR 180 VHYIAIESDA VVDPYLGMEF ESLESAKTFY YSYASRAGFE PRVRQSRKSQ DESLKMLKLV 240 CSRHRYHSGR ENNGEDTKRV HALDPSRDGC DALFEIIRKG KDVWTVSKLI LEHTHELSPA 300 PASRVHCVRS QENLKEELHV MFPDLEPFIT DLRKCIDGSR IEELFESGWN SVIVKHGLSN 360 NELLQSLYDI RQQWAPAYTK KVFYPGNQMP TTCENIEKVI EKYFSSKTEL RVAVWQLGEA 420 ISSSFEAEVQ ADYFTMFQMP PLKRLKDETL HKYRVTRYEG DEEIHTVSFN PDQSTVNCSC 480 CLFETCVKCA KEGSKSSEIY AIAKDALHKA FDEKFGKAKD SSGKSLKRSA SKSPLMESDD 540 II

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MMEPQVVDLE DDSINFWASL GVSPHVDQMP LHNVHIVDHQ AQPPPAAAAA AQPQSVCRDL  60
FPVESDACLE PRLGMEFESG EAAKTFYIAY AGRVGFSVRI ARSRKSKCSE SIIMLRFVCS  120
REGFSKEKRV VAAGKKTRKR PASIREGCNA MLEVLRRGDS KWVVTKLVKE HNHEVGLPSR  180
VHYIAIESDA VVDPYLGMEF ESLESAKTFY YSYASRAGFE PRVRQSRKSQ DESLKMLKLV  240
CSRHRYHSGR ENNGEDTKRV HALDPSRDGC DALFEIIRKG KDVWTVSKLI LEHTHELSPA  300
PASRVHCVRS QENLKEELHV MFPDLEPFIT DLRKCIDGSR IEELFESGWN SVIVKHGLSN  360
NELLQSLYDI RQQWAPAYTK KVFYPGNQMP TTCENIEKVI EKYFSSKTEL RVAVWQLGEA  420
ISSSFEAEVQ ADYFTMFQMP PLKRLKDETL HKYRVTRYEG DEEIHTVSFN PDQSTVNCSC  480
CLFETCVKCA KEGSKSSEIY AIAKDALHKA FDEKFGKAKD SSGKSLKRSA SKSPLMESDD  540
II

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do016280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320512.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021320514.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1E5VVU0	0.0	A0A1E5VVU0_9POAL; Uncharacterized protein
STRING	Si015801m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	4e-29	FAR1-related sequence 7