PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016288.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 412aa    MW: 45441.9 Da    PI: 8.5913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016288.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-056183123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  Do016288.1 61 FVCEICNKGFQRDQNLQLHRRGH 83
                89*******************88 PP
2zf-C2H213.90.00016147169123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cgk++  +s+ k H + +
  Do016288.1 147 WRCERCGKRYAVQSDWKAHVKGC 169
                 58*****************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.98E-96083No hitNo description
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PfamPF121716.3E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM0035589112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-5135167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.98E-9142167No hitNo description
SMARTSM0035595147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MRAPFLHQEV FHLLWLRLVS LILVGWLSAL TTPMDATRET KDPGAEVIAL SPRTLVATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSLPSGAGR QGDGAPPRKR VYVCPEPTCV  120
HHDPARALGD LTGIKKHFSR KHGEKRWRCE RCGKRYAVQS DWKAHVKGCG TREYRCDCGI  180
LFTRYNTYCS CVLVCMHGAM DTLISHEQAL PDQEPRSCPG LLGFLLFLKD SLLTHRAFCD  240
ALAEESARLL AAANNSSTIT TNSSNGNSSS ITTPLFLPFP NNPPLAAAQN PNAIYFLHQE  300
QAPPFLQPRM MQPSPYLDLH AGATFTTAGG GIVTDTVNFG LAPDGSVAMR AAGGGHRRLT  360
RDFLGVDGGG QVEELQLQLY AATAAASCAT DLTRQYLGER LPPVSETWSH NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-26143256372Zinc finger protein JACKDAW
5b3h_F3e-26143256372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (By similarity). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (By similarity). Seems to repress FTL11 expression (By similarity). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (By similarity). {ECO:0000250|UniProtKB:B1B534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00673SELEXTransfer from GRMZM2G011357Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016288.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614561e-132AK361456.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1141C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983079.11e-161protein indeterminate-domain 12
SwissprotB8BGV51e-124EHD2_ORYSI; Protein EARLY HEADING DATE 2
TrEMBLA0A1E5VCE40.0A0A1E5VCE4_9POAL; Protein indeterminate-domain 2
STRINGSi036003m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130962832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.18e-79indeterminate(ID)-domain 2