PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016387.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 310aa    MW: 33196.4 Da    PI: 4.3831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016387.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-1874124155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+G+r+++ +g+W+Ae+rdp+    r  r++lg+f tae Aa+a++ a++ l+g
  Do016387.1  74 SQYHGIRRRP-WGKWAAEVRDPV----RgVRVWLGTFATAEAAARAYDDAARDLRG 124
                 78********.**********63....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.13E-1574134No hitNo description
SuperFamilySSF541716.41E-2174134IPR016177DNA-binding domain
PROSITE profilePS5103223.34175132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3075134IPR001471AP2/ERF domain
PfamPF008471.3E-1175124IPR001471AP2/ERF domain
SMARTSM003804.7E-3175138IPR001471AP2/ERF domain
PRINTSPR003674.0E-107687IPR001471AP2/ERF domain
PRINTSPR003674.0E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPVGGGG GKGRKVARAV AKDDDFEAAF KEFDEDYSEE EVVLVTERKA  60
FGSGPSATRR RRPSQYHGIR RRPWGKWAAE VRDPVRGVRV WLGTFATAEA AARAYDDAAR  120
DLRGAGAKLN FPTSSATARA RKRRAAASSK ATQYVDLVDA DDVLGAHGSS IKSDDAEASD  180
TVSGDSNCSA LPDFSWQGMS TIDDGATRPA ADFNHVESER SVELSCPSKR ARTEPHEADE  240
EEVAPPAASE ESADLLLDAF MFGDQLSFFD AGAYESAMEG LFGGDAVQSN QSVGLWSFDD  300
DCLVEDIMCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18751321472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876882e-62BT087688.1 Zea mays full-length cDNA clone ZM_BFb0158A18 mRNA, complete cds.
GenBankJX4699182e-62JX469918.1 Zea mays subsp. mays clone UT3174 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795465.11e-125dehydration-responsive element-binding protein 2D-like
TrEMBLA0A1E5VD960.0A0A1E5VD96_9POAL; Uncharacterized protein
STRINGPavir.J12680.1.p1e-106(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-18ERF family protein