PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016431.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 1382aa    MW: 152271 Da    PI: 6.025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016431.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-20656155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++ a+++++g
  Do016431.1  6 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDDAALRFKG 56
                68********.**********64....55************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-19666No hitNo description
PfamPF008474.4E-13656IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-32764IPR001471AP2/ERF domain
SMARTSM003803.7E-35770IPR001471AP2/ERF domain
PROSITE profilePS5103225.317764IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21765IPR016177DNA-binding domain
PRINTSPR003675.9E-11819IPR001471AP2/ERF domain
PRINTSPR003675.9E-113046IPR001471AP2/ERF domain
PROSITE profilePS5118510.076199256IPR000738WHEP-TRS domain
CDDcd012005.83E-7204245No hitNo description
Gene3DG3DSA:1.10.287.104.8E-6204241IPR009068S15/NS1, RNA-binding
PfamPF004582.0E-7205242IPR000738WHEP-TRS domain
SuperFamilySSF556816.44E-105266561No hitNo description
Gene3DG3DSA:3.30.930.105.4E-111266350No hitNo description
PRINTSPR010435.1E-42285299IPR002315Glycyl-tRNA synthetase
Gene3DG3DSA:3.30.930.105.4E-111419578No hitNo description
PRINTSPR010435.1E-42422434IPR002315Glycyl-tRNA synthetase
PRINTSPR010435.1E-42441458IPR002315Glycyl-tRNA synthetase
PRINTSPR010435.1E-42473490IPR002315Glycyl-tRNA synthetase
TIGRFAMsTIGR003896.3E-102480788IPR002315Glycyl-tRNA synthetase
Gene3DG3DSA:3.30.930.105.4E-111645674No hitNo description
SuperFamilySSF556816.44E-105650704No hitNo description
PRINTSPR010435.1E-42655667IPR002315Glycyl-tRNA synthetase
CDDcd008581.55E-48671791No hitNo description
SuperFamilySSF529541.19E-29689805IPR004154Anticodon-binding
Gene3DG3DSA:3.40.50.8003.4E-36693805IPR004154Anticodon-binding
PfamPF031297.2E-18701788IPR004154Anticodon-binding
PRINTSPR010435.1E-42740759IPR002315Glycyl-tRNA synthetase
PfamPF031406.5E-919621366IPR004158Protein of unknown function DUF247, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006426Biological Processglycyl-tRNA aminoacylation
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004820Molecular Functionglycine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1382 aa     Download sequence    Send to blast
LLPPRPRYRG VRQRPWGKWA AEIRDPVKAA RVWLGTFDTA EDAARAYDDA ALRFKGAKAK  60
LNFPPAASFL RGVVAYPGHH HAAAQLLHRQ QSAGASSTSS TTPRPGPVHL LPSAAPGAAA  120
RGQEEFPDLS RYAHILQSGD LDLLAVARPG QSSAAPPEEP PPRTPPTATL AAAAARRRHH  180
CTAVVASMAA PSEDALRRAL AERQAAVDAQ AEAVRALKAG GGASKADVDA AVEALKALKI  240
EAGAAARRLQ QAVGAGAGGA AREELRQAVV NTLERKLFYI PSFKIYRGVA GLYDYGPPGC  300
RVKANVLSFW RQHFVLEENM LEVDCPCVTP EIVLKASGHV EKFTDLMVKD EKTGTCYRAD  360
HLLKDFCKEK LEKDLTLPQE KADEFKRVLA ILDDLSAEEL GAKIKEYGIV APDTKNPLSD  420
PYPFNLMFQT SIGPTGLSVG YMRPETAQGI FVNFKDLYYY NGQKLPFAAA QIGQAFRNEG  480
TVNNETLGYF IGRVYLFLTR LGIDKGRLRF RQHLPNEMAH YAADCWDAEI ECSYGWIECV  540
GIADRSAYDL RAHSEKSGVP LVAHEKFSKP REVEKLVIVP SKKDLGLAFK GNQKMVLEAL  600
EAMSEKEGLE MKAALESNGE TNFKVCTLGK DVVITKKMVS ISMEKKLEHQ RVFTPSVIEP  660
SFGIGRIIYC LFEHSFYTRP SKSEEEQLNV FRFPPLVAPI KCTVFPLVKN QEFDDAAKVI  720
AKELTTAGIS HIIDTTAISI GRRYARTDEI GVPFAVTVDS ATNVTIRERD SKEQIRVDIN  780
EVAFVVKQLT EGQSTWADVS AKYPAHVGPQ VALSVGLVIL ARCFCLEYSS LAHPSCIIME  840
SSLMEHLLDP SEHTPSVNAT PDEHGDAAAD DSNTVVGKGT DAGESSSSGV ASAHAEEKAA  900
DDDDVEGDEM SASMQRRLDE SSAVENEEEA GDDAEADEMA ARMERRLAAL PGKAHESEPF  960
TIFRVAGPMR DRNRHLYEPQ MVSLGPFHRG AGRHLDAMEA HKWRCLRDLL ARGGPGGATL  1020
ATYARAARAM EPRARRRYAE PVPLPPREFA EMLLLDGCFV IEFFLKGEDS ADDALFDASW  1080
AMQNVYNDLV LLENQLPFFV LECFYDMATG LGRDHFVNSL LPKYLTIDMG ASASQDSDTA  1140
RAPDGEIHHL LHLYYHWFLP PESQPGSGGG PTSGAGAGKS EEDLFEEWMS KPVDERMPWQ  1200
LPSASELKDA GVNFRAKKSP RSLVDVTFSR RDGVLEIPAV ESYTNHAIFA NLLAYEQSRG  1260
RWELQRLVSY VLLMASVVDA RRDVEILQRA GVFVKGDEET AAFYAHLGEL CPPPEFVNNC  1320
YADLLRDVRE YCGRSWNRHR AVLVHDYFSN PWTSMSAAAA VFLLVLTVVQ TIYTVLPYYH  1380
PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kr3_A4e-9826681211622Glycine--tRNA ligase
4qei_A3e-982668124615Glycine--tRNA ligase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0674700.0BT067470.1 Zea mays full-length cDNA clone ZM_BFc0057H14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VBV50.0A0A1E5VBV5_9POAL; Glycine--tRNA ligase, mitochondrial 1 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP293222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-21related to AP2 6l