PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016473.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 545aa    MW: 60922.6 Da    PI: 10.2181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016473.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.1e-11441083199
                 .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++    + ++ g++W+v++   + +++ +l++GW e   a+g+ +g fvv++++g  ++ l++k+f++
  Do016473.1  44 GGEGSALVVSPLGKVWRVEV--GRDGDGAFLGRGWAECLAAHGIGVGWFVVLRHEG--GGALTFKAFDT 108
                 34446788999*********..999999*************************765..77789999987 PP
2B343.75e-141462251496
                 T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   +++p +f++++  +++ +s++ ++ ++ g+ W+++l  +++++++++++GW++F   +g+  gD+++++++g++ f  ++k+
  Do016473.1 146 EKMIIPARFVKHYvTEEHLNSRMAVIVSPLGKFWKIEL--ENNQSGMFFAGGWSQFLVFHGISKGDVLLLRYEGNMVF--KFKA 225
                 459*******999955667889999*************..9999999***************************9999..5554 PP
3B3598.5e-19300383286
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 + ++++ +vl++ +l+l+ +f++++g ++++++tl+ +  s rsW+v     k++  y+l++GWk+F+++n+Lk+gD ++F  ++
  Do016473.1 300 IRKEINTYVLRR-LLSLSIEFCRSIGFQSTCTITLKTKMDSTRSWQVHGAAYKNKYCYILGDGWKSFCQENKLKTGDLCTFNIIE 383
                 567788999988.5***********99999999999999999*******66666666************************9765 PP
4B354.42.3e-17454535387
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 +++++ ++ +++ l+l  +f++++g+ k +++tl++ + ++rsW v+     ++++++++ GW +F+++n Lk+gD+++F ++++
  Do016473.1 454 QKEMNTNSIAKQ-LCLAPTFCSAIGLRKCCTITLKVSTNRSRSWHVRG--VMHKNGFYIGLGWIKFCRENMLKVGDICTFNVIKT 535
                 555666666665.***********************************..889999************************98763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.77E-1014111IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.009816109IPR003340B3 DNA binding domain
CDDcd100176.18E-723107No hitNo description
Gene3DG3DSA:2.40.330.101.0E-923109IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-930108IPR003340B3 DNA binding domain
PROSITE profilePS508638.47356109IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167133229IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-17133231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-18134235IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-11136229IPR003340B3 DNA binding domain
PfamPF023621.4E-11146223IPR003340B3 DNA binding domain
CDDcd100177.05E-14147226No hitNo description
SuperFamilySSF1019367.85E-16294393IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-17296393IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-8300395IPR003340B3 DNA binding domain
PfamPF023621.1E-14306389IPR003340B3 DNA binding domain
CDDcd100171.13E-10313379No hitNo description
PROSITE profilePS5086311.096313395IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-17448544IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-10453530No hitNo description
SMARTSM010190.0016453545IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17454544IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-13463538IPR003340B3 DNA binding domain
PROSITE profilePS5086310.997483545IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MASSPSDAGA RTVPKQLKAL MPPSFHKLRI SDELAGCFVT GDSGGEGSAL VVSPLGKVWR  60
VEVGRDGDGA FLGRGWAECL AAHGIGVGWF VVLRHEGGGA LTFKAFDTSL CIKEFAAPAA  120
VMVSGSSKGV ACKPQFIRII YPDLTEKMII PARFVKHYVT EEHLNSRMAV IVSPLGKFWK  180
IELENNQSGM FFAGGWSQFL VFHGISKGDV LLLRYEGNMV FKFKAFGLSG CQKDFTNQKA  240
GIQQNIEIEQ ESPSPIRKLK SNDEKPSSEE NERPKSSLTS LNRKPPRKKP DYQIGPPSWI  300
RKEINTYVLR RLLSLSIEFC RSIGFQSTCT ITLKTKMDST RSWQVHGAAY KNKYCYILGD  360
GWKSFCQENK LKTGDLCTFN IIETTLWHVT IKRSLADTKR QKESPCSPSK QYKTKKGNSG  420
SEERMRPKGS INSFSKASKY TRSVYEIGPP SWIQKEMNTN SIAKQLCLAP TFCSAIGLRK  480
CCTITLKVST NRSRSWHVRG VMHKNGFYIG LGWIKFCREN MLKVGDICTF NVIKTTLWHV  540
VIIRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.20.0putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS741e-124Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A1E5W9E30.0A0A1E5W9E3_9POAL; Putative B3 domain-containing protein
STRINGPavir.Gb02310.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-18B3 family protein