PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016504.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Nin-like
Protein Properties Length: 239aa    MW: 25254.2 Da    PI: 6.7638
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016504.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK51.61.8e-162261443
      RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkR 43
                ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI R
  Do016504.1 22 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVR 61
                6899**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151910.865592IPR003035RWP-RK domain
PfamPF020423.2E-142361IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MASDAPPPQQ QPAPQPKPTR VSLSYEEISK LFSLPIAEAA SILGVCTSVL KRICRSHGIV  60
RSSGTSQGAA KSQQGSSKAG QVSVSPPVGK QNASPSLAHG SQAKAIPSYM DDFKYGFPSS  120
GLSCETMKWW GGSSDPDCAP TKDGSRETHG EMSKGMADDD ELDWGADEAE AEADAAVTAE  180
ASAQLCSLRR RAVDAGRKLL NGDTRRGQEF SRLNKRQKLA LAQVFGASLP DVVLLVFSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0386141e-125BT038614.1 Zea mays full-length cDNA clone ZM_BFb0296N20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967322.21e-142uncharacterized protein LOC101771632
TrEMBLA0A368QZK01e-141A0A368QZK0_SETIT; Uncharacterized protein
TrEMBLK3XKT21e-141K3XKT2_SETIT; Uncharacterized protein
STRINGSi002505m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.23e-06Nin-like family protein