PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016509.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARR-B
Protein Properties Length: 832aa    MW: 88978.6 Da    PI: 8.0914
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016509.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.21.2e-25292345155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 ++r+ W+ eLH++Fvea++++ G ++A+Pk+il++m+v+gL + +v+SHLQkYRl
  Do016509.1 292 RQRISWSRELHRKFVEAINKI-GLDRAVPKNILQVMNVDGLNRGNVASHLQKYRL 345
                 58*******************.********************************8 PP
2Response_reg76.21.2e-251352461109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                   vl vdD+ + r +l++ l++ +y +v++++++e al++l+e +     ++l++ D+ mpg+dG++ll+ i  e  ++p+i+++a++e+e++ + +k 
    Do016509.1 135 VLAVDDNCTTRFVLKRQLQHCNY-NVTTVTEAETALHMLRETKdrddqFHLVISDVVMPGIDGFKLLEVISLEM-DIPVIMLSANEEMETMMKGIKH 229
                   799*****************999.999999999999999777677899**********************8765.9********************* PP

                   TESEEEESS--HHHHHH CS
  Response_reg  93 GakdflsKpfdpeelvk 109
                   Ga d+l+Kp  +e++++
    Do016509.1 230 GACDYLVKPARMEQIRN 246
                   *************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.0E-37132269No hitNo description
SuperFamilySSF521721.02E-32132257IPR011006CheY-like superfamily
SMARTSM004485.0E-29133248IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.326134252IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.2E-22135246IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.14E-26136245No hitNo description
SuperFamilySSF466895.02E-18289350IPR009057Homeodomain-like
PROSITE profilePS5129410.496289348IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-26290350IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-21293345IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MGTKARSGWR AGSGALKPVW RTVTARPRAW RIAPGWSMGL MWPWNGNGKS TTPWRRGLSC  60
AAIGSERQCG CCNARSADSD AELAGTGSMN LGARGVLGFL AGLLALSAVA FLLLIVFVLM  120
GEGMDVNMFP AGLRVLAVDD NCTTRFVLKR QLQHCNYNVT TVTEAETALH MLRETKDRDD  180
QFHLVISDVV MPGIDGFKLL EVISLEMDIP VIMLSANEEM ETMMKGIKHG ACDYLVKPAR  240
MEQIRNIWTH VVRKSSISDK KKGANHTKKL TKNKKDGDCA EEDNAGTSTQ KRQRISWSRE  300
LHRKFVEAIN KIGLDRAVPK NILQVMNVDG LNRGNVASHL QKYRLYLKKM NEGTLRHSNP  360
FVDELQAWQS AHTPADKNAP ASSQDHLELV HPAPSSIGAS SSSNAFSMMS CPSPFGMNNL  420
QQDMELVGNG VNLPEDVPVP VQDVSRFISS GSSSANMSNG VVFNISIPFS SGTSGSSSAK  480
ISNDCSPLAT SMHFPSSRSC SNYASILRAK MLEANRGIPF DADSFIEEIA AGEMPDPSSQ  540
LQLQSPELAN QHSVQIQSSS AGLFNQVAPS GHLPLQSPEL VNQPLTQIQS SSAGLFNQVS  600
RESHQFAGPS NPSNSWKIGV TSRFPDISHS AGMSIGSSQG NSVKINQLTR FVASTGLVPT  660
LENGYQNQMS GLMGRPTLMV GFSEEAVAPF NFGSSAMPIG SSAPGTSSSV RPALANLQIG  720
NSVMLTQMPN GGDATGNSNA LGSSSSVRPA LANLQIANSV MLTQVPNGGG ETGNLPGGGT  780
ADQQAVGDQV NNRNGLPAGT KAQNGAINDM DDLFAGWVNH VRSFLILFLS AY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19288351164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812922.10.0two-component response regulator ORR24-like isoform X2
TrEMBLA0A1E5VBT70.0A0A1E5VBT7_9POAL; Two-component response regulator ORR24
STRINGSi008512m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-72response regulator 10