PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016545.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 618aa    MW: 65197 Da    PI: 4.889
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016545.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS465.14.1e-1422366141374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshl 96 
                 lv++Ll+cAeav+++++++a+al++++  las++g +m+++aayf eALa+r++r        l+p ++s+    ++++a+ l   f+e +P+lkf+h+
  Do016545.1 236 LVHALLACAEAVQQENFTAADALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR--------LRPAQDSS--LLDAAFADLLhahFYESCPYLKFAHF 324
                 689****************************************************........55555553..4444444444446************* PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +l+dle+ +L+
  Do016545.1 325 TANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQ 423
                 **************************************************************************************************5 PP

        GRAS 196 vkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........lpres. 279
                  +        E++aVn+v++lhrll+++++le+    vL +v+ ++P++v+vveqea+hns+sF++rf+e+l+yys++fdsle           p+++ 
  Do016545.1 424 PEGedtddePEVIAVNSVFELHRLLAQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSGSFVDRFTESLHYYSTMFDSLEGAgggqsadaSPAAAg 518
                 4444445579***********************....*********************************************87767777775444447 PP

        GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Do016545.1 519 ATDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAgGDGYRVEEKDGCLTLGWHTRPLIATSAWR 614
                 999********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.4E-3634107IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011296.2E-3334113No hitNo description
PROSITE profilePS5098568.47210593IPR005202Transcription factor GRAS
PfamPF035141.4E-139236614IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MKREYQDAGG SGGDMGSSKD KMMAAAGGQE EEVDELLAAL GYKVRSSDMA DVAQKLEQLE  60
MAMGMGSTAA AADDGFVSHL ATDTVHYNPS DLSSWVESML SELNAPPPPL SPAPPAPRLA  120
STSSTVTGGG AAAGGSYFDL PPAVDSSSST YALKPIPSPV TASADPSTDS TREPKRMRTG  180
GGSTSSSSSS SSSLDGGRTR SSVVEAAPPA TQASAAANGP AVPVVVVDTQ DAGIRLVHAL  240
LACAEAVQQE NFTAADALVK QIPMLASSQG GAMRKVAAYF GEALARRVYR LRPAQDSSLL  300
DAAFADLLHA HFYESCPYLK FAHFTANQAI LEAFAGCRRV HVVDFGIKQG MQWPALLQAL  360
ALRPGGPPSF RLTGVGPPQP DETDALQQVG WKLAQFAHTI RVDFQYRGLV AATLADLEPF  420
MLQPEGEDTD DEPEVIAVNS VFELHRLLAQ PGALEKVLGT VRAVRPRIVT VVEQEANHNS  480
GSFVDRFTES LHYYSTMFDS LEGAGGGQSA DASPAAAGAT DQVMSEVYLG RQICNVVACE  540
GAERTERHET LGQWRNRLGR AGFEPVHLGS NAYKQASTLL ALFAGGDGYR VEEKDGCLTL  600
GWHTRPLIAT SAWRVAAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-6124361325377Protein SCARECROW
5b3h_D4e-6124361325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016545.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2425300.0AJ242530.1 Zea mays partial d8 gene for gibberellin response modulator.
GenBankBT0542620.0BT054262.1 Zea mays full-length cDNA clone ZM_BFb0203D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354393.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLA0A1E5VC250.0A0A1E5VC25_9POAL; DELLA protein DWARF8
STRINGGRMZM2G144744_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]