PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016614.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 162aa    MW: 17753.2 Da    PI: 10.4262
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016614.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-3196153359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Do016614.1  96 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSMLIVTYEGEHNHT 153
                 9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.8E-184692IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.4E-3482153IPR003657WRKY domain
PROSITE profilePS5081129.99889155IPR003657WRKY domain
SuperFamilySSF1182901.44E-2792153IPR003657WRKY domain
SMARTSM007741.6E-3794154IPR003657WRKY domain
PfamPF031062.1E-2796152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSSARSFLSS LSMDGSVASL DGKSSSFHLI GGPAMSDPVN TQQAPRRRCT GRGEDGTGKC  60
AVTGRCHCSK RSRKLRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC  120
SSVRGCPARK HVERCVDDSS MLIVTYEGEH NHTRMPTQSA QA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-2287156775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016614.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9436791e-159EU943679.1 Zea mays clone 1677305 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795417.11e-116protein WRKY1-like isoform X1
SwissprotQ93WU65e-71WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A1E5VM151e-116A0A1E5VM15_9POAL; Protein WRKY1
TrEMBLA0A2S3IK151e-114A0A2S3IK15_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3I71e-114A0A2T7C3I7_9POAL; Uncharacterized protein
STRINGPavir.Ib03991.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.15e-58WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]