PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016656.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 265aa    MW: 30113.1 Da    PI: 8.8446
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016656.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.76.2e-2187185190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 ++Yn+Y +++ Fs+r+++s++s++++e  k  fvC+k g ++++k +          +k+r +   +rt C a++ v+k+  ++wev  +e eHnHe++
  Do016656.1  87 DYYNSYTRHTRFSIRIDSSRESRKDNEKRKVFFVCQKAGVNKKQKADedgpitekkIVKQRCRDYIDRTRCPARMIVRKTAPSQWEVVFFEREHNHECV 185
                 69*****************************************99999****9988788889999*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1887185IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQTSVSAPAA TPVQSIVRCY GQSGNSAKKV DLAPTVSLLQ AESGGLTVPT AQTSSNAGDV  60
EDGVEVLSTP QEPYLGLTFS TPETARDYYN SYTRHTRFSI RIDSSRESRK DNEKRKVFFV  120
CQKAGVNKKQ KADEDGPITE KKIVKQRCRD YIDRTRCPAR MIVRKTAPSQ WEVVFFEREH  180
NHECVKKFPL TKYMKSHRDI PAEEKEFIKL LHGCCINTTR AYQIMVELYG GIENCPYTEG  240
DAKNLRVENR AEYRGKDMKA TLDYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016656.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5W4D60.0A0A1E5W4D6_9POAL; Uncharacterized protein
STRINGPavir.J26294.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-19FAR1-related sequence 5