PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016713.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26217.9 Da    PI: 7.9912
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016713.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.34.1e-231260250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                rien+  rqvtfskR  g+ KKA EL vLCda+va+++fs +g+l++++
  Do016713.1 12 RIENSVSRQVTFSKRWRGLAKKARELAVLCDADVALLVFSDKGRLHDFA 60
                8**********************************************97 PP
2K-box65.32.2e-22891571078
       K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                  e+ + +++ ++ kL+++ie  q++qR+l+Ge+L+sL+++eLqqLe+q+e++l++iRs+K+++lleq +
  Do016713.1  89 PEEMQGNMSYDHIKLRSRIEAPQKSQRNLMGEQLDSLTFRELQQLEHQIERALRNIRSRKERFLLEQNS 157
                 5667789999********************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-27362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.894363IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-27580IPR002100Transcription factor, MADS-box
CDDcd002655.23E-35575No hitNo description
PRINTSPR004044.5E-25525IPR002100Transcription factor, MADS-box
PfamPF003196.0E-231259IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-254061IPR002100Transcription factor, MADS-box
PfamPF014868.9E-1990160IPR002487Transcription factor, K-box
PROSITE profilePS5129712.70393186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRVRGKVEV RRIENSVSRQ VTFSKRWRGL AKKARELAVL CDADVALLVF SDKGRLHDFA  60
ANGSMERILD RYERHLLCEG GGYEMENHPE EMQGNMSYDH IKLRSRIEAP QKSQRNLMGE  120
QLDSLTFREL QQLEHQIERA LRNIRSRKER FLLEQNSLLE NVNLLITPLE QYKAALDTSL  180
HAKNSAPCST AAEAALPNLN ICAGDSDEPG PPAPPPGAVA GLPWWMLRPP AVG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016713.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666551e-148BT066655.1 Zea mays full-length cDNA clone ZM_BFb0041O16 mRNA, complete cds.
GenBankKJ7275051e-148KJ727505.1 Zea mays clone pUT5364 MADS transcription factor (MADS34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962945.11e-119MADS-box transcription factor 20
SwissprotQ2QQA32e-80MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A1E5VHM71e-171A0A1E5VHM7_9POAL; MADS-box transcription factor 20
STRINGSi025315m1e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-38AGAMOUS-like 8