PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016719.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 392aa    MW: 43862.4 Da    PI: 7.9617
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016719.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.81.6e-2283174290
        FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 fYn+YA + GF +r+++s++++r+g    ++++fvC keg+++++  + ++k++r+r + r gC a+++v ++  +kw++tkl+leH+H ++
  Do016719.1  83 FYNTYALRFGFGIRVARSRSERRKGveMLVMKRFVCLKEGHHKKKPVEpSSKKKRKRLSIRDGCPAMMEVVRRGPDKWVITKLVLEHTHVIV 174
                 ***************9999986665215789**********99998887889999**********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2083174IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.211265297IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-7267294IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEYSSSEDEE LVEDFIDVED DTGTENIDQG TGVMTSKIHG IDPSDGSMPP TGNELLMAAD  60
VVGKNDEPHM GMEFESDAAA RAFYNTYALR FGFGIRVARS RSERRKGVEM LVMKRFVCLK  120
EGHHKKKPVE PSSKKKRKRL SIRDGCPAMM EVVRRGPDKW VITKLVLEHT HVIVSADRAR  180
EYMDGLYASE ARKDIISFPP EQLLKTNMVL EKQAASIYTR AAFETFQVEL IEALQHYAVK  240
VQDGPYMKYY VERDGNPPTR HTVFYNVAEK KAWCDCCRFA FSAILCRHVL GVFALAGVIM  300
LPEPCITKRW TKKAKTGPEL IGLNVGNESG SADSVVSRYN DLVRDAMRCA EKGAVSAGAF  360
RVAKEVLCKA FMEIKSLGEK LNKDALHSAA SR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124138KKKPVEPSSKKKRKR
2125137KKPVEPSSKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965969.11e-138protein FAR1-RELATED SEQUENCE 5
RefseqXP_022681463.11e-138protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1E5VB970.0A0A1E5VB97_9POAL; Protein FAR1-RELATED SEQUENCE 3
STRINGPavir.J25397.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.25e-30FAR1-related sequence 3