PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016776.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 748aa    MW: 80238.4 Da    PI: 6.691
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016776.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4211e-1283727471374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...........sseelaalklfsevs 88 
                 lv+lLl+cA++vs+gd+  a + L  l+  asp gd+mqR+a+yf+ ALaarl+ s++  +++ ++  ++++            s ++l++++++++++
  Do016776.1 372 LVHLLLACADFVSKGDQPSALRHLHLLRRVASPLGDSMQRVASYFADALAARLSLSSNPSSSSSSSGGATPRGgaggapyafppSPDTLKIYQILYQAC 470
                 68***************************************************9966555555555544444468999999**99************** PP

        GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                 P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+     + +++etg+ La++A++l+vpfef++ va+rle
  Do016776.1 471 PYIKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PAAAVRETGRHLASLAASLRVPFEFHAAVADRLE 565
                 *************************************************************....88******************************** PP

        GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                  l++ +L+ + gEalaVn v +lhr++   v+l      +L+++++  Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p++s  r+kvE
  Do016776.1 566 RLRPAALQRRVGEALAVNAVNRLHRVP--AVHLGP----LLSMIRDQAPKIMTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAPRMKVE 658
                 **************************9..566666....************************************************************ PP

        GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + ll++ei+nvvacegaer++rhe+l +Wr+ +e  GF+pvpls  a+ q + ll  ++ +dgyr+ e++g+l+lgW+dr+++++SaWr
  Do016776.1 659 QCLLAPEIRNVVACEGAERVARHERLDRWRRLMEGRGFEPVPLSPAAVGQSQVLLGLYGaGDGYRLTEDKGCLLLGWQDRAIIAASAWR 747
                 ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.047346726IPR005202Transcription factor GRAS
PfamPF035143.5E-126372747IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MGMLNCADTS SGVKLQQQQA PTSPTASVSE SNIVVSSTDP DANDALAGLQ ALKFDGDIDV  60
EIQSPDIAMW ESLFAEQMGA SGGDFLMSFS PRRDFMATGS PRRDFMVSSP KRDYMVSSPK  120
RDYMMSSPKR DYMMSSPKRE YMVTSPRRDS SPRRSTFSNL YSASSHQQAY LHGAHGAAEG  180
SSGASQPLYG GLANHGKGKS QSPLHKVYIN NAHSNSGKTN GPSSLSCSSS YGHGESLSLP  240
SMDPFLDEYK ESGYLAGYQL PAKPSMENGT VTTVAPSSSQ LPTLSECLAM PEPVYGGGEE  300
AVAAVAAGGL QQMGGALPAD LYYGGQFGGD GLTLQHQMAK SDQWAADSSL HSMLGSVIQT  360
EAEQEQDSGL QLVHLLLACA DFVSKGDQPS ALRHLHLLRR VASPLGDSMQ RVASYFADAL  420
AARLSLSSNP SSSSSSSGGA TPRGGAGGAP YAFPPSPDTL KIYQILYQAC PYIKFAHFTA  480
NQAIFEAFHG EDRVHVVDLD ILQGYQWPAF LQALAARPGG PPTLRLTGVG HPAAAVRETG  540
RHLASLAASL RVPFEFHAAV ADRLERLRPA ALQRRVGEAL AVNAVNRLHR VPAVHLGPLL  600
SMIRDQAPKI MTLVEQEAGH NGPYFLGRFL EALHYYSAIF DSLDATFPAD SAPRMKVEQC  660
LLAPEIRNVV ACEGAERVAR HERLDRWRRL MEGRGFEPVP LSPAAVGQSQ VLLGLYGAGD  720
GYRLTEDKGC LLLGWQDRAI IAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-813597466378Protein SCARECROW
5b3h_A2e-813597465377Protein SCARECROW
5b3h_D2e-813597465377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016776.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828284.10.0DELLA protein RGL1-like
TrEMBLA0A1E5VBF20.0A0A1E5VBF2_9POAL; DELLA protein GAI1
STRINGSi027708m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-98RGA-like 1