PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016838.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 367aa    MW: 41430.8 Da    PI: 10.0213
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016838.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73e-181658345
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                i++  + +vtfskR+ g+lKKA+ELS LC+a va ++fs+ g+
  Do016838.1 16 IKDADRLEVTFSKRKSGLLKKASELSLLCGAHVAFVVFSPGGR 58
                7888999********************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-25665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.24666IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-22778IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-16828IPR002100Transcription factor, MADS-box
PfamPF003191.3E-191660IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-164364IPR002100Transcription factor, MADS-box
PfamPF104942.6E-24205364IPR018865Serine-threonine protein kinase 19
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGRPSKGRQR IEIRLIKDAD RLEVTFSKRK SGLLKKASEL SLLCGAHVAF VVFSPGGRAF  60
ALGTPSVDHV LRRFDPLPGD EDDGDLLALV QDGDSVSAIA DRGAVEAIVR RTEETKARVA  120
AEKERMDAVG EKVRQAMAKA GGKFWWEADV EALGEAELPE FDRALRRLRD NVQRHVDLLL  180
ASEDNLTFND TMIALQLMRT QFPKLEKSFK KDKLLRIFKL SSGQDDHAIM FMDDYLKQVA  240
FAIKRSGGKD QDGSEVFEWF ERYVVPSKLD VSINQLELTR QLIDSNIYWF AIPRIGSILK  300
GLSQGRKEIL SLLNRKKYKE MLLSSLEKTK LRLSPLDTRF LLRDLIGSGQ IKTVQTPTGL  360
LARITRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo016838.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9691674e-95EU969167.1 Zea mays clone 326554 serine/threonine-protein kinase 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811768.11e-120agamous-like MADS-box protein AGL62
TrEMBLA0A1E5UM650.0A0A1E5UM65_9POAL; Uncharacterized protein
STRINGSi007078m1e-113(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-28AGAMOUS-like 62