PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do016968.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

HB-other

Protein Properties

Length: 1237aa MW: 135879 Da PI: 8.851

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do016968.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.4	7.7e-06	74	130	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++lF+ + ++ ++e +e++ +g+t +qV+ +F +R + +k Do016968.1 74 KRPRDLLNPKAVKCMQSLFALKDTIGKRETREISLLCGVTVTQVREFFTSQRSRVRK 130 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.762	71	131	IPR001356	Homeobox domain
SMART	SM00389	0.0066	73	135	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.7E-5	74	131	IPR009057	Homeodomain-like
CDD	cd00086	0.00186	74	130	No hit	No description
SuperFamily	SSF46689	6.42E-6	74	135	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1237 aa Download sequence Send to blast
MELVAFKPAA GALVEAGFGA GAGSIPAMVA AQQQMLHEQV DQLQRLVVVQ CRLTGVNPLA 60 QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTIGK RETREISLLC GVTVTQVREF 120 FTSQRSRVRK FVRLSQEKAL RVEAPKEHDN ACSISTERIP LDIETHAEVI EPLRTLEPVL 180 PQSSSQPMDV PQISSLPMGL PQGSLPPMEV FQNSFQQAMA QQNFAAPVMP SGTMVVQPTD 240 AKISSDSVRK EIKQEEIHPG VESEDKKFLE SIFALMRKEE TFSGQIKLME WILQINNVTV 300 LSWFVTMGGL TIMSTWLSLA AIEEQTSVIL VILKVLLHLP LHKALPAQMS VVLQSINKLR 360 FYRTQDFSCF FGLIIRTYLI PRSDISSRAR NLLSRLSKVL VRSQALKKPQ KDLICKQRIN 420 EILNDGSWKS EVDITEEILA LTDGANESSK PEPRKTPMLL TAPADETNKR SATQTKSKQK 480 RKVLLVEHPN KKAAVKNANS VRNISTNNSR PLSADDIQKA KMRAMFMQEK YGKVDTSKAS 540 DKPQAMETTK TSGLVNANVL PVPRNPLRPT AQPVDPSPST SEQSTVPQPD KPEISGDLKL 600 NIGSQKNVKE KLDSKRVPWR IPPGLFISTS EAVADLSGIL FHYSFSLYMG KRLPRDTVKL 660 CSVMYANVNS STITVWIDPS WSVGTGDNSK ELEVQTQRNR REKETFYASQ KDIPLNPKDP 720 WDLEMDFDDS LTPEIPIDQA PDADTMETDS VGAAPNAAAL VEDKQIGSTS STSAAVADGV 780 NGQDPEPDLE LLTVLLKNPQ LVFALTSNKG ENVTSEQTVA LLDTLKRTGL GLSELVSTLG 840 NGAGAPKEPE PEPIPASLPS PTPSDRTTRV VWGPEHSTHV RAPNLQQPLL SNRGNTPPAN 900 TVQTSFSNVV SSIPSQPYAS VSVLPAQIQA SVPSLPQLAV SVNPPIQRVS PVNNHLNRAS 960 VHQHAQQYAL ASDPVAMSLH QQAAVNKSTH GLQSIPNTAV AHSSITEPNA SYTTLPWQSN 1020 AAHVTSTGRN ATADPWAARS SNSYNAASSS TVPYANQNAY CDQSTHRAYN AYGSEAILSH 1080 TVVPGHGLDR NGYSRPVEFQ TMARDGHQRH SRSPDPGGGR DYGGTQGYNQ QPLTHWKAGL 1140 GRQHNPETSR QWSSTQQSYT PAEPSRQWSS EHQSYAPAEP SRQWSSERQS YSVEPSRPWS 1200 SGQQGQNPEA SRQWNLGKQD PYNPSDGRRS YDQHWRR

Sequence ? help Back to Top

Protein Sequence Length: 1237 aa Download sequence Send to blast

MELVAFKPAA GALVEAGFGA GAGSIPAMVA AQQQMLHEQV DQLQRLVVVQ CRLTGVNPLA  60
QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTIGK RETREISLLC GVTVTQVREF  120
FTSQRSRVRK FVRLSQEKAL RVEAPKEHDN ACSISTERIP LDIETHAEVI EPLRTLEPVL  180
PQSSSQPMDV PQISSLPMGL PQGSLPPMEV FQNSFQQAMA QQNFAAPVMP SGTMVVQPTD  240
AKISSDSVRK EIKQEEIHPG VESEDKKFLE SIFALMRKEE TFSGQIKLME WILQINNVTV  300
LSWFVTMGGL TIMSTWLSLA AIEEQTSVIL VILKVLLHLP LHKALPAQMS VVLQSINKLR  360
FYRTQDFSCF FGLIIRTYLI PRSDISSRAR NLLSRLSKVL VRSQALKKPQ KDLICKQRIN  420
EILNDGSWKS EVDITEEILA LTDGANESSK PEPRKTPMLL TAPADETNKR SATQTKSKQK  480
RKVLLVEHPN KKAAVKNANS VRNISTNNSR PLSADDIQKA KMRAMFMQEK YGKVDTSKAS  540
DKPQAMETTK TSGLVNANVL PVPRNPLRPT AQPVDPSPST SEQSTVPQPD KPEISGDLKL  600
NIGSQKNVKE KLDSKRVPWR IPPGLFISTS EAVADLSGIL FHYSFSLYMG KRLPRDTVKL  660
CSVMYANVNS STITVWIDPS WSVGTGDNSK ELEVQTQRNR REKETFYASQ KDIPLNPKDP  720
WDLEMDFDDS LTPEIPIDQA PDADTMETDS VGAAPNAAAL VEDKQIGSTS STSAAVADGV  780
NGQDPEPDLE LLTVLLKNPQ LVFALTSNKG ENVTSEQTVA LLDTLKRTGL GLSELVSTLG  840
NGAGAPKEPE PEPIPASLPS PTPSDRTTRV VWGPEHSTHV RAPNLQQPLL SNRGNTPPAN  900
TVQTSFSNVV SSIPSQPYAS VSVLPAQIQA SVPSLPQLAV SVNPPIQRVS PVNNHLNRAS  960
VHQHAQQYAL ASDPVAMSLH QQAAVNKSTH GLQSIPNTAV AHSSITEPNA SYTTLPWQSN  1020
AAHVTSTGRN ATADPWAARS SNSYNAASSS TVPYANQNAY CDQSTHRAYN AYGSEAILSH  1080
TVVPGHGLDR NGYSRPVEFQ TMARDGHQRH SRSPDPGGGR DYGGTQGYNQ QPLTHWKAGL  1140
GRQHNPETSR QWSSTQQSYT PAEPSRQWSS EHQSYAPAEP SRQWSSERQS YSVEPSRPWS  1200
SGQQGQNPEA SRQWNLGKQD PYNPSDGRRS YDQHWRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	822	827	DTLKRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do016968.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815839.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
TrEMBL	A0A1E5VAI3	0.0	A0A1E5VAI3_9POAL; Homeobox protein LUMINIDEPENDENS
STRING	Pavir.Ea03823.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	7e-84	HB-other family protein