PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017015.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 129aa    MW: 13701.1 Da    PI: 7.5263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017015.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.4e-211263155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr+++ +g+++AeIrdp  +   +r++lg+f+taeeAa+a+++a+ + +g
  Do017015.1 12 TKYRGVRRRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDHAAFAQRG 63
                69********.**********8333..4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.47E-271271No hitNo description
PfamPF008471.5E-141263IPR001471AP2/ERF domain
SMARTSM003804.1E-331377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-311371IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-241372IPR016177DNA-binding domain
PROSITE profilePS5103224.4081371IPR001471AP2/ERF domain
PRINTSPR003674.0E-121425IPR001471AP2/ERF domain
PRINTSPR003674.0E-123753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEDGKDAGGT GTKYRGVRRR PWGKFAAEIR DPERGGARVW LGTFDTAEEA ARAYDHAAFA  60
QRGATAVLNF PGEIPGASSR GGGSSLSAAP PGGSSSRGRV RGDGEKIELE YLDDKILDDL  120
LDDGKYGRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-3041165114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0259075e-52AC025907.2 Oryza sativa Japonica Group cultivar japonica chromosome 10 clone nbxb0094K20, complete sequence.
GenBankAP0149665e-52AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126185e-52CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393227.11e-51ethylene-responsive transcription factor ERF096
SwissprotQ9LTC53e-34ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1E5VUF54e-85A0A1E5VUF5_9POAL; Uncharacterized protein
STRINGSb01g020555.11e-52(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]