PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017036.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 84aa    MW: 8742.83 Da    PI: 12.0357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017036.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.63.6e-095322855
         AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                r+r +lg+f+taeeAa a+  a+ +l+g
  Do017036.1  5 RTRLWLGTFDTAEEAALAYNSAAFCLRG 32
                589***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.986140IPR001471AP2/ERF domain
SMARTSM003805.0E-11246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-18241IPR001471AP2/ERF domain
CDDcd000181.19E-14240No hitNo description
SuperFamilySSF541718.5E-13440IPR016177DNA-binding domain
PfamPF008472.2E-5532IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
LPRNRTRLWL GTFDTAEEAA LAYNSAAFCL RGDSARLNFP KLRSGGAHLG RRGGEAGTGR  60
RGRGWQVEAV AGGTMAARGG LAGA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0423895e-57BT042389.1 Zea mays full-length cDNA clone ZM_BFb0216H21 mRNA, complete cds.
GenBankKJ7275505e-57KJ727550.1 Zea mays clone pUT5410 AP2-EREBP transcription factor (EREB71) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985387.12e-23ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E42e-22RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1E5VTG61e-50A0A1E5VTG6_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Ia04894.1.p3e-23(Panicum virgatum)
STRINGOB03G16800.18e-23(Oryza brachyantha)
STRINGSi036827m9e-23(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-15related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]