PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017041.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 355aa    MW: 37597.9 Da    PI: 4.468
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017041.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +l  ++k++G  +W++ ++  g+ R++k+c++rw +yl
       Do017041.1 16 RGSWTPQEDMRLMAYIKKHGHSNWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding49.41e-1569114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+e  ++++ +lG++ W++Ia++++ gRt++++k+ w+++l
       Do017041.1  69 RGNFTVEEEETVIRLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.4921163IPR017930Myb domain
SuperFamilySSF466891.5E-2913110IPR009057Homeodomain-like
SMARTSM007173.8E-121565IPR001005SANT/Myb domain
PfamPF002499.1E-151663IPR001005SANT/Myb domain
CDDcd001674.28E-101863No hitNo description
PROSITE profilePS5129424.6364118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2567118IPR009057Homeodomain-like
SMARTSM007175.4E-1468116IPR001005SANT/Myb domain
PfamPF002494.7E-1469114IPR001005SANT/Myb domain
CDDcd001679.78E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLMAY IKKHGHSNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTVEEEETV IRLHGLLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKVAL  120
REQQKAGASK NDGAASGDAG TPASASSSAS SSTTTNNSSG GSDSGDQCGT SKEPDAAVDV  180
SVSPLQLGDI DVSDMLVDAH ATVAAQPMLS SLCSSSSLTT CIDGGVEELI ELPVIDIEPD  240
IWSIIDAVES ADAPDASGAP HGDATAPCTG AAVSTSEAEA AANDWWLEDL EKELGLWGPT  300
EGPQAQTDLL DHTALGPLVD AERDPVSTYF QTRPANAVAE LLDVEMELEP SALLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141185108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814304.11e-177myb-related protein Zm1-like
SwissprotP200241e-162MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A1E5VII10.0A0A1E5VII1_9POAL; Myb-related protein Zm1
STRINGSi017704m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.16e-67myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]