PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017074.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 2055aa    MW: 224665 Da    PI: 4.254
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017074.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.1e-1113211343527
                  --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                  +Crf++ tG C+yG++C+F+H++
  Do017074.1 1321 NCRFYMLTGSCSYGSSCHFNHPQ 1343
                  7********************97 PP
2zf-CCCH291.9e-0913791402427
                  ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                  + C +++r+GtC+yG +C+F+H++
  Do017074.1 1379 RKCTYYMRNGTCRYGKKCCFNHPE 1402
                  67********************96 PP
3zf-CCCH21.63.9e-0715111536227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                   +++C+f +r+G Ck+ ++C++ H++
  Do017074.1 1511 ERPECPFLLRFGNCKFASSCQYYHPK 1536
                  689*********************96 PP
4zf-CCCH36.67.5e-1215851608427
                  ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                  ++C+f+++tG+Ck+G+ CkF+H++
  Do017074.1 1585 PECPFYMKTGFCKFGADCKFHHPK 1608
                  89********************96 PP
5zf-CCCH20.77.2e-0716511677127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                  ++++ Cr+++++G Ck+ + C F+H++
  Do017074.1 1651 PGQPDCRYYMQFGKCKFQSACIFNHPK 1677
                  5789*********************96 PP
6zf-CCCH32.81.2e-1016871710427
                  ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                  ++C+f+++tGtC++G+ C F H++
  Do017074.1 1687 AECPFYMKTGTCQFGSACEFYHPK 1710
                  68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525403.51E-11111235IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.4E-5111158IPR002182NB-ARC
PfamPF009316.7E-6200237IPR002182NB-ARC
SMARTSM003566.2E-513161343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.87313161344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-513201343IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-913211343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-513221342IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-513751402IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.72313751403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-513781403IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-713791402IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-413811402IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.33815101537IPR000571Zinc finger, CCCH-type
SMARTSM003560.08115101536IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-615811608IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.38515811609IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-915851608IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-515861609IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-415871607IPR000571Zinc finger, CCCH-type
SMARTSM003560.004216501677IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.18316501678IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-416521677IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-516831710IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.96716831711IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-516851712IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-816871710IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-416891709IPR000571Zinc finger, CCCH-type
SuperFamilySSF525407.97E-1219402028IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.3E-719582027IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009318.3E-1319642029IPR002182NB-ARC
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2055 aa     Download sequence    Send to blast
MYDMDNVLDK WQIMQWGMGP STSSMLECCK ISLLFCCRNP GGTYKIGRKI QALNKRLERI  60
MQRSKHFDFI SKVVGSSRYP DHKAVKYHKK SGSSIIHSDI VGEKVEQDTS KTTLARMIFN  120
DSAVEEIFDK RIWLSVNQDV DETDVLQRVL AALDGMSEYR GSVRDKDQLE CAVKRAASGM  180
NFSGSHLMMV LQVIFSDEDK SEIVGLEDIG MDIVKRCDGL PLAVKVVGGL LLSRSRTRGF  240
VRDDTGSQLP EDLGIEYYKE LISRNLLEQD NQFKDRSAWI MHDVVRSFAQ YVIRDEGLLV  300
IEWREWDWDE QVQAMPVLQS LRIDSCKLRV FSSLPLRLPL APAAAAMAGV EDEDEFKDAL  360
APADPPPSSP SPASKPKPAA AAAGGGGGGG LGRRFLASIP LPASLSAAIG RFSSPKPPAS  420
NVGLGLLLHA APAPPADDSG AATASDAASG IGSPHPPPLA SLQRQHGEGQ VAGPGAGVGE  480
EELGLAPAVE QGRATAEGRE KEGAAVDGCS ANRNDFSLRG QEEKGEQCQG DDLGAAVDDC  540
MVQDQEVAVA VVEQEGATED CTVVVEDQSN NALVEQCAGD ETRAVKDDSA VEVNEEVTEQ  600
EGAVSILAAE DGVAVGSQEE EDVVLAEQGE DFISVQDQLE VVEQCTGDQL RTTTDEIAAQ  660
DETRAVKCTG DQLNTATDDN AARNQEVVGQ EGATKYYAAL EAVEECTNDG SRVAKDGNIV  720
EETERAVKQE GAVGVLNAAK DSVTVESQEE DVVVAEQGED DISVQDQHKV VEQCTSDQLR  780
TTMDDNAAQD QEVLKQEGAT KYYTALEAVE ECTNDGSRAA KDGNIVEEME RAVKQEGAVG  840
VLNAAKDNVT VELQEEDVVV AEQGEDDISV QDQHKVVEQW TSDQLRTTMD DNAAEGQEVI  900
EQEGSIVDRD ATTDDIAVEG QEKEVKQSAG DESRATKDEN AVEVNEKVVD QEDVIDKHGV  960
IKDGSGVELL EENSVVEQGG DGISLPDEQY ASYQLRATTD DNAAENQEVV EQEGAYVARV  1020
ATTDGIAVED QEKEVEQSAG DESNATKDGN GVEDNEVHQE DVIDKQGVIK DGSDVKSQEE  1080
DMVVAEEGED GISVRDVANV VEQCTSDQLR ATTEDNAGEC QEVVKQEGAI VEMNATADAI  1140
TVEDQDKEVE QSAGDESTET KDENAVEDNE RVVDQEDAID KQGTAKDGSG VESQEEDVVV  1200
AEQGRDGISV RDEGNVVEQC TSDQPRTTDN NATEDQEAVE QGVVSILSAA KVDIVVESRE  1260
EDIVMAEQVE DGVSVQDQDK VVEQCTIDQT SMDGYAVEDQ EATREKIGFS AGYPQRPGKL  1320
NCRFYMLTGS CSYGSSCHFN HPQLKAKLEV SSFPSEQRNR EVEFLELNRV GLPIREGARK  1380
CTYYMRNGTC RYGKKCCFNH PEQVLDVQLH MPTGWDDANL QYSPHSKKSA EHATIDEGEH  1440
ATISSGSEIL PQNILRMLLP PQNVPPCTEE KEMKVKKDPD WPSASDDSDG CCSADSSDGP  1500
LCKQEHADHP ERPECPFLLR FGNCKFASSC QYYHPKDKIP SRHHPKDKFP SRHHQRDNFQ  1560
SRNRPKNDPP LAEELKVYPD KSGGPECPFY MKTGFCKFGA DCKFHHPKDI TPSMQGPASP  1620
KRVVAANEHH PAARIMLQDH MYQQQKCPER PGQPDCRYYM QFGKCKFQSA CIFNHPKDRL  1680
SSGWHPAECP FYMKTGTCQF GSACEFYHPK DRCSSTGEAI DDGTDYEHDF VTKSENFLQQ  1740
QEKTTYPERP AAPSRSIHFG TPLPFLSLLS LLHPLVMAAV LDAFASKLAD ILMDMAKEEV  1800
EMLLGVPGEI TKFETTLGDL SSILVDAERR RIRDSAVERW IMEGGEDPSV SAAAPKTTSG  1860
CWDIPKMFFC FRNPVVAHEI GRKIQALNQR LVDLERRSSR FGFITQAINS SAYSTNKAAN  1920
SLCGETGSVI IQSDVVGEKI EEDTKKIVDL LTNEVDAPVG LKDNNAFVVV AITGMGGIGK  1980
TTLARMVFRD STVEENFEER VWLSVNQEVN EISVLQSVLG SFGAKHEGFA GNKDLLERAL  2040
NGHDPPKEEV FIGDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017074.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982130.30.0uncharacterized protein LOC101775251
TrEMBLA0A3L6TKQ10.0A0A3L6TKQ1_PANMI; Uncharacterized protein
STRINGSi033903m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-37floral homeotic protein (HUA1)