PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017415.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 232aa    MW: 24781.5 Da    PI: 10.3887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017415.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12821221055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +rRR++iN+++ +L++l+P +      K + +++L ++++Y+ksLq
  Do017415.1  82 KRRRHKINERLKTLQQLVPGC-----YKSNQVSTLDQTIKYMKSLQ 122
                 9*******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.11972121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1178127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1381132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1382129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-982122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-1282126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MQPPAAFSLW SSPPPEVRFD PPSEDEMASW LCAIVRGEEL AILNDDDGRR DVPAKGSGDA  60
STTTDKTAEK LPVTAEAKGT KKRRRHKINE RLKTLQQLVP GCYKSNQVST LDQTIKYMKS  120
LQHHVQAMSI GPAHPAAAAM YPVVPSQYVP PAAPVAMPMS AAPMVLGQPP TMVSFGAMLL  180
PLPRYPAAVP VMMPAAAAPP RAPGGARSSA SHQQGSSRSK GRGSSSMRHQ KQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806978.12e-70putative transcription factor bHLH056
TrEMBLA0A1E5WGT91e-167A0A1E5WGT9_9POAL; Uncharacterized protein
STRINGPavir.Ca02790.1.p5e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.12e-15bHLH family protein