PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017444.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 247aa    MW: 27509.5 Da    PI: 9.4347
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017444.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.3e-091751992146
                      TT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  21 ggtWktIartmgkgRtlkqcksrwqk 46 
                       + W+ Ia++++ gRt++++k++w++
       Do017444.1 175 QNKWSIIASKLP-GRTDNDVKNYWNT 199
                      457*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0068138203IPR001005SANT/Myb domain
SuperFamilySSF466893.98E-8174206IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-13174207IPR009057Homeodomain-like
CDDcd001671.98E-6174199No hitNo description
PROSITE profilePS500906.888174201IPR017877Myb-like domain
PfamPF002492.7E-6176199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPGRILFRAR RHRQEPSPLV AWGWRGVEWS GQWSSITDLD WFLLKLLHKV KVNLLFVQGD  60
DLCAICDNGG DVTCDIHFET KEGPNGYMQR AWDELEGPDG RVIPRDRILI YCTKHDIIKK  120
LGTPKRNHII FPKKLRVPKT LVDPPNEEDI PKEAELLDNG SPEPSLSPWQ VASGQNKWSI  180
IASKLPGRTD NDVKNYWNTK LKKKAKAPAA FAAPATLPPA ALSPASSSVT SSSGDVRFAG  240
YPQPQAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794308e-40HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.19e-08myb domain protein 103