PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017520.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 154aa    MW: 16175.9 Da    PI: 8.1273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017520.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000143355123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C +C++ F+++  L  H++ H
  Do017520.1 33 FACCYCPRKFRSSQALGGHQNAH 55
                78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.96E-53259No hitNo description
PROSITE profilePS5015710.0343360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEAAADSREE EGLELSLSLH PSPTSPPRFQ AVFACCYCPR KFRSSQALGG HQNAHKLQRN  60
LARRGREAAS APPAPLPPPP AVADQGNSRA SGSESAPAPR TRAEPGADVW GEGRHRRQHH  120
LLLHQGPAGG AEASSGGRGN GDDAGEIIDL SLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9704071e-102EU970407.1 Zea mays clone 344595 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822925.16e-66zinc finger protein 1-like
TrEMBLA0A1E5VJH71e-105A0A1E5VJH7_9POAL; Uncharacterized protein
STRINGPavir.Gb01881.1.p6e-65(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-14zinc finger protein 2