PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do017566.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

TCP

Protein Properties

Length: 204aa MW: 21031.9 Da PI: 10.5997

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do017566.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.8	3.9e-34	52	147	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg..............k 89 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c+++ s ss++++ g + Do017566.1 52 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSSAPSTSSGAHPLLGkrpredqeppapapA 147 89*******************************************************999995555555555555544444444443444433330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.4E-30	51	127	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	51	105	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MASRDAATFQ VYRPMPAPSP APAPAPISLA AAAPAGDVAA PVPKKASPGA GKDRHSKVNG 60 RGRRVRMPIV CAARVFQLTR ELGLKSDGQT IEWLLRQAEP SILAATGSGT TPAVFSCSSA 120 PSTSSGAHPL LGKRPREDQE PPAPAPAPFW ATLQAARPVA WGLSPAQEAA AQAYASVAAA 180 QQGHHLNLLS VLSGATRPSE EESR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do017566.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727696	1e-106	KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976294.1	2e-89	transcription factor PCF1
Swissprot	Q9FMX2	2e-38	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1E5V9B4	1e-140	A0A1E5V9B4_9POAL; Transcription factor TCP7
STRING	Si011076m	8e-89	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-36	TCP family protein