PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017593.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 262aa    MW: 28278.8 Da    PI: 4.5883
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017593.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind74.91.4e-231472260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl+k+ye+++d++++ ++ w+  g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+Y
    Do017593.1 14 FLSKTYEMVDDPATDAVVGWTPPGTSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTY 72
                  9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-22973IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-26974IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-2810236IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-161437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-201473IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-165264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-166577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEAGGGGASS LPPFLSKTYE MVDDPATDAV VGWTPPGTSF VVANQAEFCR DLLPKYFKHN  60
NFSSFVRQLN TYVSRHDPSF LFLLTPVCPI GELHSSGESD HPEPSPPSRM HTSSAGAGDS  120
VSKMHTSSAG AGDSHSSHDV TESTSCAESP PLPQMQSCTD SGAKVSEIDV NLEPAITETG  180
PSRDQPAEDP PHVPGANDGF WEQFLTEQPG SNAHQEVQSE RRDGDNKGEQ TRIGDRENLW  240
WGKKNVEQMT EKLGHLTSAE KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-224751990Heat shock factor protein 1
5d5v_B9e-224751990Heat shock factor protein 1
5d5v_D9e-224751990Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4924601e-139EU492460.1 Pennisetum glaucum heat shock transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816816.11e-102heat stress transcription factor A-4b isoform X2
SwissprotQ94J161e-72HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A1E5V8K70.0A0A1E5V8K7_9POAL; Heat stress transcription factor A-4b
STRINGPavir.Ea02873.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.14e-28heat shock factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]