PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017722.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 331aa    MW: 34491.7 Da    PI: 6.0821
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017722.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08233253526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C ++ar G+Ck G++C+F Hg
  Do017722.1 233 PCLYYAR-GFCKNGSSCRFVHG 253
                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.657228255IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028230254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5231253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5232253IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5233253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDAYEATKVV FSRIQALDPD HAAKIMGLLL IQDHGEKEMI RLAFGPESLL HAVMAKARKD  60
LGLLLPASPT SVAAAGHAPL LQLPRQNSGR AGAPSPLSVS SPSSWAQAPV FSRSNSTSNG  120
TAEEAAGPGE ELPSPVNGGA APFFPQGGDA LLDDLQLQEP LPFLNEGGVN PAHQLPGFDG  180
GECWSPPGPG DGGGMLPFGL GWPNGGPVHR RSASVNELCF GGGGGGDGFG WKPCLYYARG  240
FCKNGSSCRF VHGGLPDDAA ALAASKMEAA ADQQQQCQDF LLRSKSQRLG PGAFPYSPTG  300
SLPGSPSAAS KCLSFLMQQQ QQQQQQQQHD R
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017722.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9757272e-81EU975727.1 Zea mays clone 498431 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467925.11e-174zinc finger CCCH domain-containing protein 22 isoform X1
SwissprotQ10M001e-151C3H22_ORYSJ; Zinc finger CCCH domain-containing protein 22
TrEMBLA0A1E5V8P30.0A0A1E5V8P3_9POAL; Zinc finger CCCH domain-containing protein 53
STRINGSb01g036490.11e-174(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14331115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]