PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017740.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 136aa    MW: 14386.6 Da    PI: 4.4541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017740.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.6e-1690135351
         AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaark 51 
                 + GVr ++ +g+++AeIrd    + k +r++lg+f+++e Aa a+++a+ 
  Do017740.1  90 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDSPEAAALAYDQAAF 135
                 57******.**********32..2.24*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.79589136IPR001471AP2/ERF domain
SMARTSM003805.9E-1689136IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1690135IPR016177DNA-binding domain
PfamPF008471.5E-1190135IPR001471AP2/ERF domain
PRINTSPR003672.8E-890101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2290135IPR001471AP2/ERF domain
CDDcd000182.85E-1390124No hitNo description
PRINTSPR003672.8E-8113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSSSYPHPAS SCGGAAVTGM APDTGGDDMQ RLLNELMLGM AESESFSDDM EAASSDSSSS  60
ACSANDSQQR PDDHNTSDDK KSPAQRPATF IGVRKRPWGK FAAEIRDSTR KGARVWLGTF  120
DSPEAAALAY DQAAFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18881361361Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017740.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276838e-51KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802925.19e-43ethylene-responsive transcription factor 1B-like
SwissprotQ8VYM01e-22ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A1E5VB993e-94A0A1E5VB99_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Ba02781.1.p4e-45(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.16e-25ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]