PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do017926.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 405aa    MW: 42808.1 Da    PI: 8.6493
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do017926.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.5e-35281212103
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll++i
    Do017926.1  28 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQLLCEI 115
                   9********************6667*****************************************999.........******************* PP

                   XXXXXX CS
  HSF_DNA-bind  98 krkkse 103
                   +r+k++
    Do017926.1 116 HRRKTS 121
                   ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3617113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5824118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.53E-3125118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3028118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MERMERCGSW ECDAAAQAAA QKAVPAPFLT KTYQLVDDPA TDHIVSWGDD RVSTFVVWRP  60
PEFARDILPN YFKHNNFSSF VRQLNTYGFR KVVPERWEFA NEFFRKGEKQ LLCEIHRRKT  120
SASTASPSPP PFFAPPHFPL FHPGAPHHHH HHPFVGGDEG VALAAAHGMG VAFPHQHWRE  180
PQASAPVATR LLALGAPPAP SPLPAAEGGG GAGNAGRAAT AAVLMEENER LRRSNTALLQ  240
ELAHMRKLYN DIIYFVQNHV RPVAPSPAAA AFLQGLGLQA RSKKPAPVAV AGLNNNSGGS  300
TTSSSSLTIA EEPSPPPQHH ADKSGGGEAG SSGTARSAAA APTMLFGVHL SVASSGGAGT  360
KRPASPEEDA PSTSPARKPR LALECADLSL TMAAPSAASS PASTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-221912312125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo017926.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560021e-177AK356002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957003.11e-179heat stress transcription factor B-4c
SwissprotQ67U941e-153HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A1E5W1A00.0A0A1E5W1A0_9POAL; Heat stress transcription factor B-4c
STRINGSi030056m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-57heat shock transcription factor B4