PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do017935.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

WRKY

Protein Properties

Length: 182aa MW: 19859.4 Da PI: 9.2866

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do017935.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.9	1.9e-32	103	161	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+ Do017935.1 103 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHS 161 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.8E-34	88	161	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-29	95	161	IPR003657	WRKY domain
PROSITE profile	PS50811	29.207	98	160	IPR003657	WRKY domain
SMART	SM00774	7.7E-38	103	162	IPR003657	WRKY domain
Pfam	PF03106	2.0E-25	104	160	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MLSSAADHHG SLYPLLLPGI PFCNSGAGEK PTGFVVLDAG EAAGTSAAKA GGEIASTTTA 60 TLHGSSSWWK GPVVAGEKGR MKARRKMREP RFCFQTRSDV DLLDDGYKWR KYGQKVVKNS 120 LHPRSYYRCT HSNCRVKKRV ERLSEDCRMV ITTYEGRHTH SPCSDDADAA GDRTGSCAFT 180 SL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-26	94	160	8	74	Probable WRKY transcription factor 4
2lex_A	5e-26	94	160	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	86	GRMKARRKM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do017935.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067982	1e-123	BT067982.1 Zea mays full-length cDNA clone ZM_BFb0009G22 mRNA, complete cds.
GenBank	BT068156	1e-123	BT068156.2 Zea mays full-length cDNA clone ZM_BFb0072A01 mRNA, complete cds.
GenBank	EU665432	1e-123	EU665432.1 Triticum aestivum WRKY3 transcription factor mRNA, complete cds.
GenBank	EU972805	1e-123	EU972805.1 Zea mays clone 388369 WRKY36 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825009.1	1e-114	probable WRKY transcription factor 12
Swissprot	Q93WY4	8e-58	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	A0A1E5V8D7	1e-133	A0A1E5V8D7_9POAL; Putative WRKY transcription factor 12
STRING	Si030985m	1e-108	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1138	38	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	9e-59	WRKY family protein

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]