PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do018030.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 246aa MW: 26809.5 Da PI: 9.5115

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do018030.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.6e-13	83	130	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++ErrRR+++ + f L +++P + +K++K++iL +++Y+k+L+ Do018030.1 83 QEHIAAERRRREKMQQQFVALATMVPDL-----TKMDKISILGSTIRYVKHLE 130 6799*********************9.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.059	80	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-11	83	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-18	84	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-16	84	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-12	85	134	No hit	No description
SMART	SM00353	1.7E-13	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MQQWFQDPSM AQRFGSASAL PNVSFGGAVA VKIDQPSSSS ILSFGALPAA STLNFSGGDW 60 PYCATEGVPQ EPERRIRSHL STQEHIAAER RRREKMQQQF VALATMVPDL TKMDKISILG 120 STIRYVKHLE QKVKTLEKQS ARTTSSKSTV FEDKGHISSS NNQHASGPSG STYGVSGSIP 180 TVEASIHDNT VLLKISCERR SGVLVMIISK LESLSLFIIN TSVLPFSDSY FSINITAKAR 240 IPCPNC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	93	ERRRRE
2	89	94	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do018030.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828601.1	1e-117	transcription factor bHLH18-like
TrEMBL	A0A1E5V8L3	0.0	A0A1E5V8L3_9POAL; Transcription factor bHLH25
STRING	Pavir.Hb01590.1.p	1e-113	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-31	bHLH family protein