PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018044.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 290aa    MW: 30981.7 Da    PI: 7.762
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018044.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-164393256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr ++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g+
  Do018044.1 43 RYRGVRCRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDVAARAMRGN 93
                69****999.**********84....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.31E-2742100No hitNo description
SuperFamilySSF541713.14E-2143100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-3043100IPR001471AP2/ERF domain
PfamPF008471.1E-94392IPR001471AP2/ERF domain
PROSITE profilePS5103222.14243100IPR001471AP2/ERF domain
SMARTSM003801.2E-3243106IPR001471AP2/ERF domain
PRINTSPR003671.5E-84455IPR001471AP2/ERF domain
PRINTSPR003671.5E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEDAANAHLY AHAHHHLHRS KRPSPAAIND EDRDCDARPK GARYRGVRCR PWGRFAAEIR  60
DPMSKERRWL GTFDTAEQAA CAYDVAARAM RGNKARTNFP GHATAPGYWP WGAPPQPAAA  120
AAAHTFNPFL LHNLIMSSSN HGFRLLHHAG HGHAVNSSAP SRPPAPGTNT PVPSLVAPPP  180
GALDDEDVDD CGGLLRSEPA DAGLLQDALH GFYPTGTQPR GGASARAAAA AAAVPVKLER  240
RKAFIDVDEE EGDEYPVMPQ GLLGDVIQYP AFVQVVAAAP PAPTLRGRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1840100263ATERF1
3gcc_A1e-1840100263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548771e-109EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955045.11e-128ethylene-responsive transcription factor ESR2
TrEMBLA0A1E5V7L20.0A0A1E5V7L2_9POAL; Ethylene-responsive transcription factor ESR2
STRINGSi020138m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-30DORNROSCHEN-like