PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018203.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 256aa    MW: 27799.3 Da    PI: 5.6459
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018203.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-0799124326
                 S---SGGGGTS...--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartG...tCkyGdrCkFaHg 26 
                  e+C++f+r      C++G +C+FaHg
  Do018203.1  99 GEPCPDFRR-RpgaACPRGTTCPFAHG 124
                 689****99.558*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-595128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0896125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.88296126IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-5100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4131162IPR000571Zinc finger, CCCH-type
SMARTSM0035625134157IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLDPAALGGS VSWADPAAVE IPPQLLAALG EYHSAGRGGV GGDGDAAEAE AEADDEFMMY  60
EFKVRRCARA RSHDWTACPY AHPGEAARRR DPRRAAYTGE PCPDFRRRPG AACPRGTTCP  120
FAHGTFELWL HPSRYRTRPC RAGAACRRRV CFFAHAAAEL RAAPKDDGHG SPLSLSLSPK  180
STLASLWESP PVSPVEGRMR WLDAVDESPD AEVEELMLAM RELSFRKQAA MSSAPVLPPV  240
TEEDGPDLGW VSELVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018203.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676911e-162BT067691.1 Zea mays full-length cDNA clone ZM_BFc0130E04 mRNA, complete cds.
GenBankEU9536021e-162EU953602.1 Zea mays clone 1437892 CCCH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303637.11e-145zinc finger CCCH domain-containing protein 37-like
SwissprotQ65X921e-129C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1E5VLN00.0A0A1E5VLN0_9POAL; Zinc finger CCCH domain-containing protein 37
STRINGSi022958m1e-133(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-28C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]