PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018273.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 294aa    MW: 33403.9 Da    PI: 10.1103
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018273.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-16206291191
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                 f+k++ + ++ + ++l lp +f++eh   +e++k +tl de+ +++ ++++ ++++  y +t  W++F+ +++L+ gD +vF+l++ ++f+
  Do018273.1 206 FVKTM-TQYYATASWLALPTQFCREHL--PENDKVITLVDEEDEEFGIQYRKWRTDHNYRIT--WRGFATDHNLDGGDCLVFQLIQPRKFK 291
                 67777.666667778***********4..346679****************9****99*999..********************9977774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-20200293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-18201293IPR015300DNA-binding pseudobarrel domain
CDDcd100173.26E-21204294No hitNo description
PROSITE profilePS5086310.828205294IPR003340B3 DNA binding domain
PfamPF023626.7E-14206292IPR003340B3 DNA binding domain
SMARTSM010194.7E-11206293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MADGAAYEEQ RRRQVEENKR KIEELGLRHL AAAAMPPQAK QLKHKARVPG AAASSAATQL  60
RRSGRVADLP EQPNYREPPR NFKKKIGSGA TAVERSYAIA KAKELEGQLG ADYPTFVKTM  120
TQNYVTTSWL AKAKQLKHKA RVPGAAAASL AVLPRRSGRV ANLPGQPNYR EPNLKDRIWH  180
DPEERNYAIA KAKELEGELG ADYPTFVKTM TQYYATASWL ALPTQFCREH LPENDKVITL  240
VDEEDEEFGI QYRKWRTDHN YRITWRGFAT DHNLDGGDCL VFQLIQPRKF KVRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018273.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698151.11e-58B3 domain-containing protein Os06g0194400
RefseqXP_022679065.11e-58B3 domain-containing protein Os06g0194400
SwissprotQ69V362e-41Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A368SP645e-58A0A368SP64_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3739033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-29B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]