PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018363.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family E2F/DP
Protein Properties Length: 384aa    MW: 42606.8 Da    PI: 7.1721
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018363.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP56.45e-1850101157
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealn 57 
                 rkeksL+ll+++f+ l+++++ + + l+e+ak+L    v  +rRRiYDi+NVLe+++
  Do018363.1  50 RKEKSLGLLCSNFVVLYNREDVESIGLDEAAKRL---GV--ERRRIYDIVNVLESVG 101
                 79****************9999************...**..*************985 PP
2E2F_TDP80.81.2e-25168248171
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                 rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Do018363.1 168 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEgheetNMRTKVRRLYDIANVLSSLNLIEKiqqgdTRKPAFRWLG 248
                 79*****************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-1946101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.19E-1149101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.0E-1650112IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.7E-1551101IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-23165249IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-32168248IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-20169248IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.44E-13170249IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAASSSSVAE VAMAAAAAAA MESAFPQEQQ QAPPRPQGGG AKSRHHAYSR KEKSLGLLCS  60
NFVVLYNRED VESIGLDEAA KRLGVERRRI YDIVNVLESV GERALREKSG LAPLQTEQQS  120
SATMSDDEDD DKLGNPDGDI ENEKLSQTMD NRSDKPGAPR CRLRSDHRKE KSLGLLTQNF  180
VKLFLTMEVD TISLDEAAKL LLGEGHEETN MRTKVRRLYD IANVLSSLNL IEKIQQGDTR  240
KPAFRWLGRA VIPNAENGVT VAVPPPEKIS RLGQGKTSGF VYGPFHPAGA RKHELDGSNK  300
PGQRERAEDW ESLSASFRPQ YQNQGHLAIV HYGHLTIVST FMRNVVVTLG DLFAHYVEAW  360
KTWYSELAQG SKQQHFSQSV NHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A7e-29492403228Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0611851e-144BT061185.1 Zea mays full-length cDNA clone ZM_BFb0119O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795108.10.0E2F transcription factor-like E2FE
TrEMBLA0A1E5WGM50.0A0A1E5WGM5_9POAL; E2F transcription factor-like E2FF
STRINGGRMZM2G361659_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.12e-67DP-E2F-like protein 3