PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018501.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 386aa    MW: 42078.2 Da    PI: 5.6958
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018501.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyeyss
  Do018501.1 10 RIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSS 59
                8***********************************************96 PP
2K-box81.81.6e-2781171898
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 ++ +++ + +q+e+a L+++++nLq+++R+l+GedL+ L++keLq+Le+qLe+sl+ +RskK  l++++  +l +k + +++en +L kk+
  Do018501.1  81 ANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLETSLRGVRSKKASLFHQENMDLYNKINLIRQENAELYKKV 171
                 3778999********************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
CDDcd002651.05E-45277No hitNo description
SuperFamilySSF554551.27E-31280IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2684171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.70787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMIFSS TGRLYEYSST  60
SMKSVIDRYG KAKEEQQVVV ANPNSELKFW QREAASLRQQ LHNLQENHRQ LMGEDLSGLN  120
VKELQSLENQ LETSLRGVRS KKASLFHQEN MDLYNKINLI RQENAELYKK VYQTEGPSEV  180
NQESPTPYNF AVVENTDVPV QLGLSTLPQQ NSIEPSTAPK LGLFAIGGLD LVIDRLGSIL  240
DFIADRVGDF DIGGQAPARP RAAVERLTFE GGTLSHVCDV TTNPCVTTHP PASSTFMGMA  300
GYSSTSVFDL LENCTEDSSS DAGDSNEALA HHECYMVNIA EGASGGAPPP PPASANDGAA  360
GAAANAVAQF NQPTPKQLLA QRFQRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-19177177Myocyte-specific enhancer factor 2B
1tqe_Q8e-19177177Myocyte-specific enhancer factor 2B
1tqe_R8e-19177177Myocyte-specific enhancer factor 2B
1tqe_S8e-19177177Myocyte-specific enhancer factor 2B
5f28_A8e-19177177MEF2C
5f28_B8e-19177177MEF2C
5f28_C8e-19177177MEF2C
5f28_D8e-19177177MEF2C
6c9l_A8e-19177177Myocyte-specific enhancer factor 2B
6c9l_B8e-19177177Myocyte-specific enhancer factor 2B
6c9l_C8e-19177177Myocyte-specific enhancer factor 2B
6c9l_D8e-19177177Myocyte-specific enhancer factor 2B
6c9l_E8e-19177177Myocyte-specific enhancer factor 2B
6c9l_F8e-19177177Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018501.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1121491e-167AF112149.1 Zea mays MADS box protein 2 (mads2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798442.11e-151MADS-box transcription factor 27 isoform X1
SwissprotQ6EP491e-140MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2S3GQL91e-149A0A2S3GQL9_9POAL; Uncharacterized protein
TrEMBLA0A2T7F8881e-149A0A2T7F888_9POAL; Uncharacterized protein
STRINGPavir.Ab02020.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-86AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]