PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018594.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 245aa    MW: 25934 Da    PI: 6.3555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018594.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20109159155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GVr+++ +g+W+AeIrdp     +   r +lg+f+tae+Aa+a++ a+ +++g
  Do018594.1 109 SKYRGVRRRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEDAARAYDVAAVEFRG 159
                 89********.**********7.....338***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-29109166No hitNo description
SuperFamilySSF541714.05E-23109168IPR016177DNA-binding domain
PfamPF008471.7E-12109159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-31110168IPR001471AP2/ERF domain
PROSITE profilePS5103225.528110167IPR001471AP2/ERF domain
SMARTSM003807.2E-35110173IPR001471AP2/ERF domain
PRINTSPR003673.6E-11111122IPR001471AP2/ERF domain
PRINTSPR003673.6E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAPRLERGGF HLPNTEQENS LFLRALISVV SGDAAVPALL PEEAAAAQAV EAPAPAACST  60
CGADGCAGGC DVVAGVEAAG PSSDSEEGGE CSASRVTGGV GKRRRRRVSK YRGVRRRPWG  120
KWAAEIRDPH RAVRKWLGTF DTAEDAARAY DVAAVEFRGQ RAKLNFPAAA AAAAPASSWA  180
QTSTYYHLPP QPLPEPLHEN CGSNASSPVH VAQQAGTRPV AKEQDIWDGL NEIMMLDDGS  240
FWSMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201101671472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KRRRRR
2101107KRRRRRV
3102117RRRRRVSKYRGVRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018594.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749753e-79EU974975.1 Zea mays clone 461977 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806850.11e-120ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1E5VP641e-177A0A1E5VP64_9POAL; Uncharacterized protein
STRINGSi018144m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-15ethylene response factor 110