PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018629.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ZF-HD
Protein Properties Length: 257aa    MW: 27606.3 Da    PI: 8.5125
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018629.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer44.73.1e-141302959
  ZF-HD_dimer 29 mpsegeegtaaalkCaACgCHRnFHRrevee 59
                 mps geeg+ +alkC+ACgCHRnFHR+eve+
   Do018629.1  1 MPS-GEEGSLEALKCSACGCHRNFHRKEVED 30
                 566.889*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152311.866127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-9129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.3E-12128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.06E-21125197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-31128198IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-27138194IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MPSGEEGSLE ALKCSACGCH RNFHRKEVED DDDGMYAAGE SFGHRAARRL LAPALPHHSK  60
AGGGGLLVSA ADPYGAYAAA RGLPPALPPP GHGHHHHHQY VMPLSMIHHT SESDDMDGAT  120
AGGGDPARGG SGGSSSSKKR FRTKFTPEQK ARMLEFAERV GWRLQKLDDG MVQAFCQEIG  180
VKRRVLKVWM HNNKHNLATK RLELEASPQQ DQAMAAMPPS PPPQMPLQMV FPPPPQAAGP  240
SCHRGVPGSP PPPLKLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-241371961675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018629.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9668551e-155EU966855.1 Zea mays clone 297761 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678039.13e-99zinc-finger homeodomain protein 4 isoform X1
RefseqXP_008678040.11e-99zinc-finger homeodomain protein 4 isoform X2
RefseqXP_008678042.11e-99zinc-finger homeodomain protein 4 isoform X2
RefseqXP_008678044.11e-99zinc-finger homeodomain protein 4 isoform X2
RefseqXP_008678045.11e-99zinc-finger homeodomain protein 4 isoform X2
RefseqXP_008678046.11e-99zinc-finger homeodomain protein 4 isoform X2
RefseqXP_020408059.11e-99zinc-finger homeodomain protein 4 isoform X2
SwissprotQ53N876e-62ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A1E5UIC20.0A0A1E5UIC2_9POAL; Zinc-finger homeodomain protein 4
STRINGGRMZM2G068330_P021e-98(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-27homeobox protein 21