PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018635.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 156aa    MW: 16095.9 Da    PI: 5.2161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018635.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14655255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +y+ Vr+ + +gr++AeIrdp     r + ++lg+f++ae Aa+a++aa+++++g
  Do018635.1  6 KYSVVRRQP-SGRYAAEIRDP---A-RkTPIRLGTFDSAEAAARAYDAAARSIWG 55
                899***999.7*********8...2.35***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-22669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-23664IPR001471AP2/ERF domain
PROSITE profilePS5103217.978663IPR001471AP2/ERF domain
PfamPF008475.4E-8655IPR001471AP2/ERF domain
PRINTSPR003671.9E-5718IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-161064IPR016177DNA-binding domain
PRINTSPR003671.9E-54565IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
GDAEVKYSVV RRQPSGRYAA EIRDPARKTP IRLGTFDSAE AAARAYDAAA RSIWGAAART  60
NFPSTVESWS GGIGGGVAAV TAAGALRGAI PAAAEEDCRS YCSFSSSVLC EDGASCAGGV  120
KAAAAPRCSP LPFNLNVADP EAANDMDWRC DTLLHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-136711480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018635.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9660013e-57EU966001.1 Zea mays clone 290693 ethylene-responsive transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801489.13e-56ethylene-responsive transcription factor 3-like
TrEMBLA0A1E5V8F01e-107A0A1E5V8F0_9POAL; Uncharacterized protein (Fragment)
STRINGGRMZM2G322672_P014e-48(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.13e-11ethylene responsive element binding factor 4