PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018651.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 254aa    MW: 25570.8 Da    PI: 8.4809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018651.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015106128123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ Cgk++ +   L  H  +H
  Do018651.1 106 YECSVCGKVYASYQALGGHKTSH 128
                 99********9999998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.034106133IPR007087Zinc finger, C2H2
SuperFamilySSF576672.33E-8106128No hitNo description
PfamPF139126.3E-13106130IPR007087Zinc finger, C2H2
SMARTSM003550.04106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576672.33E-8158185No hitNo description
PfamPF139121.9E-11162187IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12163185IPR007087Zinc finger, C2H2
SMARTSM003550.52163185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSLAMALDAA LDVASKPPVP PPSPPRMDSW ARGGRRSKRR AGSPSSGGGG GGGGGAEQSE  60
EEYLALCLLM LSRGVRGDDA EDGGGVVVAA SKSAGAAAAA KASQGYECSV CGKVYASYQA  120
LGGHKTSHRK PPTPPAPATP QVAAAPAGEE PAPGGAHAEE KVHQCTLCLR TFPTGQALGG  180
HKRLHYEGGA DGVKADKDAA KTKAASAAQA TSVLRDFDLN LPAATAAATA ATTVEEPERA  240
LPEAKRARMM LLVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018651.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958179.16e-83zinc finger protein 1-like
TrEMBLA0A1E5V0081e-178A0A1E5V008_9POAL; Uncharacterized protein
STRINGPavir.J16973.1.p3e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.15e-23C2H2 family protein