PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018677.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 426aa    MW: 47643.4 Da    PI: 7.7187
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018677.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.74.7e-161259249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ien++ r+ tf kRr g++K A+ LS+L++++vav++ s++ ++  +
  Do018677.1 12 FIENDRDRSLTFFKRRSGLFKTASDLSTLTGVRVAVVLESEKERFSSF 59
                8*****************************************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-13162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.764363IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-7525IPR002100Transcription factor, MADS-box
CDDcd002661.58E-17665No hitNo description
SuperFamilySSF554552.09E-16979IPR002100Transcription factor, MADS-box
PfamPF003199.9E-181259IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-72540IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-74061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPRVGRRSGL RFIENDRDRS LTFFKRRSGL FKTASDLSTL TGVRVAVVLE SEKERFSSFG  60
TPDASSIVDA FLSGDAPTKF DTSEEQKAKT TNLHNEKLQL EKYKAMRNTR KKEKLEQIKA  120
MQQTSRTAKY AYGKEEDLDF LELCEMRHML SQVEQEINGR WSTLLHDNHV EVGGQLRDPS  180
LLKPTWWRSM PLEVVMPPRY SPLAPSQASF QQHPWSSTAH LVQARSSSSL PNPMMLPSQQ  240
IQPKLQQHPL LPCIPSIVQL QAPPPREDYP YNYHIHGLDI NGNNSHPFLL YPLSPSPPLE  300
PSSMQAPPSN SPLPQSLSTQ FSSSLHLNSR QLSFNPQHYN SMQQPQNYGN ASSTLNCSHQ  360
PFYGNSLGLD AEIENTGGNG GQTFGLSTVQ QCDGWTRVIP KSSSAGESST VGDAGSNLGD  420
LNFPWY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815415.11e-172transcription factor RLM1-like
TrEMBLA0A1E5V7Q60.0A0A1E5V7Q6_9POAL; Uncharacterized protein
STRINGPavir.Eb02038.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-12AGAMOUS-like 62