PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do018895.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NF-YB

Protein Properties

Length: 159aa MW: 16764.9 Da PI: 9.8166

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do018895.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	118.9	2.4e-37	38	127	6	95
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 lP+an++r+m++v+P+++kis ak+++++c++ef++fv++eas+++ +++r+ti+++d+ a+ lGf+dyvep+++y+++yre + Do018895.1 38 TALPMANLVRLMRRVIPKDTKISSSAKHLTHDCAVEFVGFVAGEASEQAAAQHRRTIAPEDFTCAFQALGFDDYVEPMSTYIRRYREHNH 127 579************************************************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.6E-28	38	128	IPR009072	Histone-fold
SuperFamily	SSF47113	4.19E-24	38	129	IPR009072	Histone-fold
Pfam	PF00808	1.1E-15	39	102	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-5	67	85	No hit	No description
PRINTS	PR00615	1.1E-5	105	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MGRKAKRGAK KGGRDGEKAA AADVRASSDG EGGTAAGTAL PMANLVRLMR RVIPKDTKIS 60 SSAKHLTHDC AVEFVGFVAG EASEQAAAQH RRTIAPEDFT CAFQALGFDD YVEPMSTYIR 120 RYREHNHNAA GYGGFVPRPP PAATAAAAAP AAAEPAWRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-26	40	124	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269\|PubMed:11971906}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do018895.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243257	1e-104	AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822765.1	1e-66	nuclear transcription factor Y subunit B-1-like
Swissprot	Q6Z348	6e-42	NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBL	A0A1E5V6A6	1e-111	A0A1E5V6A6_9POAL; Nuclear transcription factor Y subunit B-1
STRING	Si018339m	2e-61	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	6e-28	nuclear factor Y, subunit B1