PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018934.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family DBB
Protein Properties Length: 231aa    MW: 24669.8 Da    PI: 4.9864
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018934.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07446541
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                 C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  Do018934.1  4 QCDACEAAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46
                7******99*********************6678888898877 PP
2zf-B_box27.37.7e-095485334
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                 ++C+ ++ek + +fC +++ l+C+dC + +H
  Do018934.1 54 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85
                689**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.111147IPR000315B-box-type zinc finger
PfamPF006431.8E-5447IPR000315B-box-type zinc finger
SMARTSM003364.6E-9447IPR000315B-box-type zinc finger
SMARTSM003364.6E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501198.9025299IPR000315B-box-type zinc finger
PfamPF006431.4E-65495IPR000315B-box-type zinc finger
CDDcd000213.19E-75585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKIQCDACEA AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLEAL SARLPRCDVC  60
QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGLVSAS ACSAACSDGH  120
DSDHHAPPKA TIEPPQPAVS AAAQQLQKES PLGFKELEWF ADIDLFHDQA APKAGRTLAE  180
VPELFGSQPA SDAAYYRPSK AGAGAGVRQS KKARIEVTDD EEDYLIVPDL G
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696720.0EU969672.1 Zea mays clone 333885 salt tolerance-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953029.11e-146B-box zinc finger protein 25
SwissprotQ9SID16e-71BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A1E5V6221e-166A0A1E5V622_9POAL; B-box zinc finger protein 25
STRINGSb04g025400.11e-136(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.16e-54salt tolerance homologue
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]